miRNA display CGI


Results 1 - 20 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 10689 1.13 0.004854
Target:  5'- uUCUGGUACAAACGCAACGCCACCGGCa -3'
miRNA:   3'- -AGACCAUGUUUGCGUUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 102359 0.87 0.213981
Target:  5'- --aGGUgGCAGAUGUGGCGCCGCCGGCg -3'
miRNA:   3'- agaCCA-UGUUUGCGUUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 197261 0.84 0.284527
Target:  5'- --cGGUGCuuGACGCGGCGCCGgCGGCg -3'
miRNA:   3'- agaCCAUGu-UUGCGUUGCGGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 166228 0.82 0.380317
Target:  5'- gCUGGUAgaaGAGCGUGAUGCCGCCcGGCg -3'
miRNA:   3'- aGACCAUg--UUUGCGUUGCGGUGG-CCG- -5'
14309 5' -53 NC_003521.1 + 164431 0.82 0.380317
Target:  5'- gCUGGUGCua--GCAGCGCCACCgcGGCc -3'
miRNA:   3'- aGACCAUGuuugCGUUGCGGUGG--CCG- -5'
14309 5' -53 NC_003521.1 + 111874 0.81 0.422484
Target:  5'- -gUGGUGCAGACGCugguggagAACGCCacGCUGGCg -3'
miRNA:   3'- agACCAUGUUUGCG--------UUGCGG--UGGCCG- -5'
14309 5' -53 NC_003521.1 + 177804 0.81 0.43125
Target:  5'- gCUGGUG--GGCGUcgugGGCGCCGCCGGCu -3'
miRNA:   3'- aGACCAUguUUGCG----UUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 198611 0.81 0.44012
Target:  5'- -gUGGUGCGAuUGCGACaGCCGCUGGCc -3'
miRNA:   3'- agACCAUGUUuGCGUUG-CGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 156623 0.8 0.467339
Target:  5'- cCUGGUGCu-GCGCGACGCCcUgGGCu -3'
miRNA:   3'- aGACCAUGuuUGCGUUGCGGuGgCCG- -5'
14309 5' -53 NC_003521.1 + 114677 0.8 0.485958
Target:  5'- -----gACAAGCGCGACGCCGCCuGGCc -3'
miRNA:   3'- agaccaUGUUUGCGUUGCGGUGG-CCG- -5'
14309 5' -53 NC_003521.1 + 130359 0.8 0.495399
Target:  5'- --cGGccGCAGGCGCcgugcgcgcucAGCGCCACCGGCg -3'
miRNA:   3'- agaCCa-UGUUUGCG-----------UUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 184629 0.8 0.495399
Target:  5'- --cGGUACAGACcuGCGcCGUCACCGGCu -3'
miRNA:   3'- agaCCAUGUUUG--CGUuGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 44087 0.79 0.502058
Target:  5'- --cGGUGCAGGCGCcgccgccaccaccguCGCCGCCGGUg -3'
miRNA:   3'- agaCCAUGUUUGCGuu-------------GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 20710 0.79 0.504923
Target:  5'- uUCUGG-GCGGACGCGACccguaCCGCUGGCg -3'
miRNA:   3'- -AGACCaUGUUUGCGUUGc----GGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 148422 0.79 0.504923
Target:  5'- -aUGGUGCGGGCgGCcGCGCCGgCGGCu -3'
miRNA:   3'- agACCAUGUUUG-CGuUGCGGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 185016 0.79 0.514524
Target:  5'- aCUGGUuCGAGCGCAccaucuAUGCCGgCGGCa -3'
miRNA:   3'- aGACCAuGUUUGCGU------UGCGGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 164584 0.79 0.514524
Target:  5'- gCUGGcgagACAGuaacCGCcACGCCACCGGCc -3'
miRNA:   3'- aGACCa---UGUUu---GCGuUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 101234 0.79 0.533943
Target:  5'- cCUGGUGC---CGCGGCGCCA-CGGCa -3'
miRNA:   3'- aGACCAUGuuuGCGUUGCGGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 120201 0.78 0.55065
Target:  5'- --gGGUGCccugcccgcugccaAAACGCAGaCGCUACCGGCa -3'
miRNA:   3'- agaCCAUG--------------UUUGCGUU-GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 111588 0.78 0.563533
Target:  5'- --aGGUGCc-GCGCGugGCCAgCGGCg -3'
miRNA:   3'- agaCCAUGuuUGCGUugCGGUgGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.