miRNA display CGI


Results 1 - 20 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 31474 0.66 0.989476
Target:  5'- --aGGUACAucACGUAaccGCGUCGCgGGUu -3'
miRNA:   3'- agaCCAUGUu-UGCGU---UGCGGUGgCCG- -5'
14309 5' -53 NC_003521.1 + 57010 0.66 0.989476
Target:  5'- --cGGUcACGGACGC--CGCCACgCGGa -3'
miRNA:   3'- agaCCA-UGUUUGCGuuGCGGUG-GCCg -5'
14309 5' -53 NC_003521.1 + 71368 0.66 0.989476
Target:  5'- cCUGGcgACGAACcCGcCGCCGCCGacGCc -3'
miRNA:   3'- aGACCa-UGUUUGcGUuGCGGUGGC--CG- -5'
14309 5' -53 NC_003521.1 + 36512 0.66 0.989343
Target:  5'- aCUGGaGCAAcauCGUGACGCCcaaaucguccagcGCCGaGCu -3'
miRNA:   3'- aGACCaUGUUu--GCGUUGCGG-------------UGGC-CG- -5'
14309 5' -53 NC_003521.1 + 172134 0.66 0.989476
Target:  5'- cUCUGGUugGuggagaaaauGCGCAGCaUCACCuGCu -3'
miRNA:   3'- -AGACCAugUu---------UGCGUUGcGGUGGcCG- -5'
14309 5' -53 NC_003521.1 + 44802 0.66 0.99073
Target:  5'- cCUGcUGCAGAUGCucACGCagcugcacgagGCCGGCg -3'
miRNA:   3'- aGACcAUGUUUGCGu-UGCGg----------UGGCCG- -5'
14309 5' -53 NC_003521.1 + 96770 0.66 0.989476
Target:  5'- -----aACGGuCGCcguCGCCGCCGGCa -3'
miRNA:   3'- agaccaUGUUuGCGuu-GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 155134 0.66 0.994618
Target:  5'- cCUGGa--GAACcuGCGGCGCgugcuggaCGCCGGCu -3'
miRNA:   3'- aGACCaugUUUG--CGUUGCG--------GUGGCCG- -5'
14309 5' -53 NC_003521.1 + 37117 0.66 0.99073
Target:  5'- --cGG-ACAAgaucacggcGCGCAACauGCCGCgCGGCu -3'
miRNA:   3'- agaCCaUGUU---------UGCGUUG--CGGUG-GCCG- -5'
14309 5' -53 NC_003521.1 + 104615 0.66 0.990366
Target:  5'- gUCUGGUggACAuggacugcgagaagAGCGCcuucaugcucGACGCCGCCGc- -3'
miRNA:   3'- -AGACCA--UGU--------------UUGCG----------UUGCGGUGGCcg -5'
14309 5' -53 NC_003521.1 + 70696 0.66 0.99073
Target:  5'- gUCUGcGccGCAAGCuGCGucgGCGCCugcgccggauguACCGGCa -3'
miRNA:   3'- -AGAC-Ca-UGUUUG-CGU---UGCGG------------UGGCCG- -5'
14309 5' -53 NC_003521.1 + 210950 0.66 0.99073
Target:  5'- --aGGUGCAA---CAGCGCCA-CGGCc -3'
miRNA:   3'- agaCCAUGUUugcGUUGCGGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 118288 0.66 0.99073
Target:  5'- --cGGUAgcAGCaGCAcuaccacCGCCGCCGGCc -3'
miRNA:   3'- agaCCAUguUUG-CGUu------GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 67722 0.66 0.989075
Target:  5'- gCUGGUGCAAGUGCucuucaagaucuucuCGCaacaguGCCGGCu -3'
miRNA:   3'- aGACCAUGUUUGCGuu-------------GCGg-----UGGCCG- -5'
14309 5' -53 NC_003521.1 + 144953 0.66 0.99061
Target:  5'- gCUGGcucGCGAcgaagggcuGCGCGACauccugaGCCAgCGGCa -3'
miRNA:   3'- aGACCa--UGUU---------UGCGUUG-------CGGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 162833 0.66 0.99073
Target:  5'- cUCUGcgcgaccaucGUGCAGAacgGCGAgccCGCgGCCGGCu -3'
miRNA:   3'- -AGAC----------CAUGUUUg--CGUU---GCGgUGGCCG- -5'
14309 5' -53 NC_003521.1 + 187306 0.66 0.989075
Target:  5'- --cGGUGgGAGCGgccgcgucggacaaCAGCG-CACCGGCu -3'
miRNA:   3'- agaCCAUgUUUGC--------------GUUGCgGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 235304 0.66 0.99073
Target:  5'- aCUGGcgacgACAGAUGCGACGgcuacaCCGCCucuGGUg -3'
miRNA:   3'- aGACCa----UGUUUGCGUUGC------GGUGG---CCG- -5'
14309 5' -53 NC_003521.1 + 56598 0.66 0.989476
Target:  5'- -gUGGUugAugacGCGUAugGCCGCCa-- -3'
miRNA:   3'- agACCAugUu---UGCGUugCGGUGGccg -5'
14309 5' -53 NC_003521.1 + 129690 0.66 0.99061
Target:  5'- gCUGucgACGGGCGagGACGCCcgcuucuGCCGGCc -3'
miRNA:   3'- aGACca-UGUUUGCg-UUGCGG-------UGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.