miRNA display CGI


Results 1 - 20 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 112393 0.74 0.762181
Target:  5'- cCUGGcu--GGCGCAguGCGCCgACCGGCc -3'
miRNA:   3'- aGACCauguUUGCGU--UGCGG-UGGCCG- -5'
14309 5' -53 NC_003521.1 + 138020 0.77 0.64401
Target:  5'- --aGGUGCGcgUGCGuCGCUGCCGGCg -3'
miRNA:   3'- agaCCAUGUuuGCGUuGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 137389 0.77 0.64805
Target:  5'- aCUGGUGCAGACGCgcgucgacaucAaccccgaccucauguACGCCACCaGCg -3'
miRNA:   3'- aGACCAUGUUUGCG-----------U---------------UGCGGUGGcCG- -5'
14309 5' -53 NC_003521.1 + 42955 0.76 0.654106
Target:  5'- cCUGcagcccaGCGAGCGCGAC-CCGCCGGCg -3'
miRNA:   3'- aGACca-----UGUUUGCGUUGcGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 31422 0.76 0.664186
Target:  5'- gCUGGcgUGCAGcaggcggaugauGCGCAGCGCCAgcaCGGCg -3'
miRNA:   3'- aGACC--AUGUU------------UGCGUUGCGGUg--GCCG- -5'
14309 5' -53 NC_003521.1 + 143515 0.76 0.693243
Target:  5'- gUCUGGauguCGGGCcugauccGCAcgcGCGCCGCCGGCg -3'
miRNA:   3'- -AGACCau--GUUUG-------CGU---UGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 61735 0.76 0.698217
Target:  5'- aCUGGUACAGgaggcGCGCAGuuuucagccguucccCGUCACCGGg -3'
miRNA:   3'- aGACCAUGUU-----UGCGUU---------------GCGGUGGCCg -5'
14309 5' -53 NC_003521.1 + 132622 0.75 0.752742
Target:  5'- --cGGcuucCAGACucggcgGCGGCGCCACCGGCg -3'
miRNA:   3'- agaCCau--GUUUG------CGUUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 124162 0.74 0.762181
Target:  5'- gCUGccGUGCAGGCGaUAGCGCCugugcgccuGCCGGCu -3'
miRNA:   3'- aGAC--CAUGUUUGC-GUUGCGG---------UGGCCG- -5'
14309 5' -53 NC_003521.1 + 201665 0.77 0.64401
Target:  5'- aCUGGgccGCGAGCu--GCGCCGCCGGUg -3'
miRNA:   3'- aGACCa--UGUUUGcguUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 145860 0.77 0.633904
Target:  5'- cUCUGGgcccgGCGgcgggcggcgccGACGaCGAgGCCGCCGGCg -3'
miRNA:   3'- -AGACCa----UGU------------UUGC-GUUgCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 133003 0.78 0.593542
Target:  5'- --gGGUugGGACGgggaCAGcCGCCACCGGCa -3'
miRNA:   3'- agaCCAugUUUGC----GUU-GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 164431 0.82 0.380317
Target:  5'- gCUGGUGCua--GCAGCGCCACCgcGGCc -3'
miRNA:   3'- aGACCAUGuuugCGUUGCGGUGG--CCG- -5'
14309 5' -53 NC_003521.1 + 166228 0.82 0.380317
Target:  5'- gCUGGUAgaaGAGCGUGAUGCCGCCcGGCg -3'
miRNA:   3'- aGACCAUg--UUUGCGUUGCGGUGG-CCG- -5'
14309 5' -53 NC_003521.1 + 156623 0.8 0.467339
Target:  5'- cCUGGUGCu-GCGCGACGCCcUgGGCu -3'
miRNA:   3'- aGACCAUGuuUGCGUUGCGGuGgCCG- -5'
14309 5' -53 NC_003521.1 + 114677 0.8 0.485958
Target:  5'- -----gACAAGCGCGACGCCGCCuGGCc -3'
miRNA:   3'- agaccaUGUUUGCGUUGCGGUGG-CCG- -5'
14309 5' -53 NC_003521.1 + 130359 0.8 0.495399
Target:  5'- --cGGccGCAGGCGCcgugcgcgcucAGCGCCACCGGCg -3'
miRNA:   3'- agaCCa-UGUUUGCG-----------UUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 184629 0.8 0.495399
Target:  5'- --cGGUACAGACcuGCGcCGUCACCGGCu -3'
miRNA:   3'- agaCCAUGUUUG--CGUuGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 148422 0.79 0.504923
Target:  5'- -aUGGUGCGGGCgGCcGCGCCGgCGGCu -3'
miRNA:   3'- agACCAUGUUUG-CGuUGCGGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 164584 0.79 0.514524
Target:  5'- gCUGGcgagACAGuaacCGCcACGCCACCGGCc -3'
miRNA:   3'- aGACCa---UGUUu---GCGuUGCGGUGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.