miRNA display CGI


Results 1 - 20 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 64 0.67 0.988093
Target:  5'- aUUGGcGCAAgguuGCGCGugucgcuUGCCGCgGGCg -3'
miRNA:   3'- aGACCaUGUU----UGCGUu------GCGGUGgCCG- -5'
14309 5' -53 NC_003521.1 + 421 0.68 0.971457
Target:  5'- gCUGuGUGCug--GCGAgGCCaaGCCGGCg -3'
miRNA:   3'- aGAC-CAUGuuugCGUUgCGG--UGGCCG- -5'
14309 5' -53 NC_003521.1 + 751 0.68 0.96827
Target:  5'- ---cGUGCAAgccccACGCcggaggccaagcaGGCGCCAUCGGCg -3'
miRNA:   3'- agacCAUGUU-----UGCG-------------UUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 1012 0.66 0.992786
Target:  5'- --cGGcuucUACGcGCGCAucACGCCgcgcagccagaugGCCGGCg -3'
miRNA:   3'- agaCC----AUGUuUGCGU--UGCGG-------------UGGCCG- -5'
14309 5' -53 NC_003521.1 + 1438 0.77 0.64401
Target:  5'- aCUGGgccGCGAGCu--GCGCCGCCGGUg -3'
miRNA:   3'- aGACCa--UGUUUGcguUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 2472 0.72 0.856736
Target:  5'- -aUGGgu---ACGCGACGgCGCCGGCc -3'
miRNA:   3'- agACCauguuUGCGUUGCgGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 4338 0.67 0.988093
Target:  5'- ----aUGCcuGGCGCcacCGCCGCCGGCg -3'
miRNA:   3'- agaccAUGu-UUGCGuu-GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 5699 0.66 0.992884
Target:  5'- --gGGaACGGGCGC--CGUCACCGGg -3'
miRNA:   3'- agaCCaUGUUUGCGuuGCGGUGGCCg -5'
14309 5' -53 NC_003521.1 + 6088 0.68 0.976652
Target:  5'- --cGGUGCGgcGGCGUucCGCCA-CGGCu -3'
miRNA:   3'- agaCCAUGU--UUGCGuuGCGGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 6726 0.7 0.946822
Target:  5'- -gUGGUGCAgggccuGACGCAgccaGCGCuCGCCGaGUc -3'
miRNA:   3'- agACCAUGU------UUGCGU----UGCG-GUGGC-CG- -5'
14309 5' -53 NC_003521.1 + 7653 0.72 0.871629
Target:  5'- cCUGGacaAUAGAUGCcaGACGCUgaaGCCGGCg -3'
miRNA:   3'- aGACCa--UGUUUGCG--UUGCGG---UGGCCG- -5'
14309 5' -53 NC_003521.1 + 7724 0.68 0.971457
Target:  5'- uUUUGGgugGgGAGgGCGGCGCgAgCGGCg -3'
miRNA:   3'- -AGACCa--UgUUUgCGUUGCGgUgGCCG- -5'
14309 5' -53 NC_003521.1 + 7815 0.7 0.92783
Target:  5'- gCUGG-AC-GGCGuCAAgGCCAuCCGGCg -3'
miRNA:   3'- aGACCaUGuUUGC-GUUgCGGU-GGCCG- -5'
14309 5' -53 NC_003521.1 + 8002 0.69 0.965159
Target:  5'- --aGGUACcGGgGCAGCGCCguagcuccagaccGCCGGa -3'
miRNA:   3'- agaCCAUGuUUgCGUUGCGG-------------UGGCCg -5'
14309 5' -53 NC_003521.1 + 10689 1.13 0.004854
Target:  5'- uUCUGGUACAAACGCAACGCCACCGGCa -3'
miRNA:   3'- -AGACCAUGUUUGCGUUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 11449 0.74 0.78979
Target:  5'- cUUUGGgccACGAACgacguguacaaGCGACGUCACUGGCa -3'
miRNA:   3'- -AGACCa--UGUUUG-----------CGUUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 12675 0.66 0.989476
Target:  5'- -gUGGUugGuGCGC--CGCgACCGGUu -3'
miRNA:   3'- agACCAugUuUGCGuuGCGgUGGCCG- -5'
14309 5' -53 NC_003521.1 + 12716 0.68 0.978523
Target:  5'- gCUGcUACGcGCGCAACaGCCuggacgagguuuCCGGCg -3'
miRNA:   3'- aGACcAUGUuUGCGUUG-CGGu-----------GGCCG- -5'
14309 5' -53 NC_003521.1 + 12860 0.68 0.968569
Target:  5'- -----aGCAGACGCAGCGgUACgGGCc -3'
miRNA:   3'- agaccaUGUUUGCGUUGCgGUGgCCG- -5'
14309 5' -53 NC_003521.1 + 14203 0.68 0.976652
Target:  5'- gCUGGUgugcugcgGCGAGCcCcuGACGCCGCUGGg -3'
miRNA:   3'- aGACCA--------UGUUUGcG--UUGCGGUGGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.