miRNA display CGI


Results 1 - 20 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 240613 0.67 0.988093
Target:  5'- aUUGGcGCAAgguuGCGCGugucgcuUGCCGCgGGCg -3'
miRNA:   3'- aGACCaUGUU----UGCGUu------GCGGUGgCCG- -5'
14309 5' -53 NC_003521.1 + 240467 0.73 0.84899
Target:  5'- --cGGUcGCAGGCGC--CGCCuCCGGCa -3'
miRNA:   3'- agaCCA-UGUUUGCGuuGCGGuGGCCG- -5'
14309 5' -53 NC_003521.1 + 240355 0.74 0.78979
Target:  5'- gCUGGcagaGCcuguGACGCAACGCugccuCACCGGCu -3'
miRNA:   3'- aGACCa---UGu---UUGCGUUGCG-----GUGGCCG- -5'
14309 5' -53 NC_003521.1 + 239495 0.66 0.994618
Target:  5'- --cGGUugGAccgauACaGCcGCGCCacucGCCGGCg -3'
miRNA:   3'- agaCCAugUU-----UG-CGuUGCGG----UGGCCG- -5'
14309 5' -53 NC_003521.1 + 239357 0.67 0.98491
Target:  5'- gUCUGcaGCgGGAUGCccguguGCuGCCACCGGCg -3'
miRNA:   3'- -AGACcaUG-UUUGCGu-----UG-CGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 239229 0.71 0.898866
Target:  5'- gCUGGUG--GAUGUGGCGCUGCaCGGCc -3'
miRNA:   3'- aGACCAUguUUGCGUUGCGGUG-GCCG- -5'
14309 5' -53 NC_003521.1 + 236671 0.66 0.989476
Target:  5'- gCUGGUccugGgGAAgGgGAgaGCCGCCGGCc -3'
miRNA:   3'- aGACCA----UgUUUgCgUUg-CGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 236460 0.66 0.992884
Target:  5'- --cGGgacGCGGGcCGCGAUGagcgaaCCGCCGGCg -3'
miRNA:   3'- agaCCa--UGUUU-GCGUUGC------GGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 236138 0.77 0.613696
Target:  5'- --cGGgACGGgggggaccGCGCGACGUCGCCGGCg -3'
miRNA:   3'- agaCCaUGUU--------UGCGUUGCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 235304 0.66 0.99073
Target:  5'- aCUGGcgacgACAGAUGCGACGgcuacaCCGCCucuGGUg -3'
miRNA:   3'- aGACCa----UGUUUGCGUUGC------GGUGG---CCG- -5'
14309 5' -53 NC_003521.1 + 235274 0.69 0.962182
Target:  5'- --cGGaacaACGAugGCGGCgGCCgcGCCGGCu -3'
miRNA:   3'- agaCCa---UGUUugCGUUG-CGG--UGGCCG- -5'
14309 5' -53 NC_003521.1 + 234700 0.66 0.993624
Target:  5'- uUCUGGUGCuguuccugaacuaucAcaaccagauagccguGGCGgAACGCCgccgcACCGGCc -3'
miRNA:   3'- -AGACCAUG---------------U---------------UUGCgUUGCGG-----UGGCCG- -5'
14309 5' -53 NC_003521.1 + 234292 0.72 0.856736
Target:  5'- cCUGGgGCgGGACGCAGaccgcccuCGUCACCGGUg -3'
miRNA:   3'- aGACCaUG-UUUGCGUU--------GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 233047 0.66 0.993799
Target:  5'- gCUGGUGUAAG-GCu-CGUCugCGGCg -3'
miRNA:   3'- aGACCAUGUUUgCGuuGCGGugGCCG- -5'
14309 5' -53 NC_003521.1 + 232816 0.66 0.994618
Target:  5'- gUCUGGaGCuacGGCGC--UGCC-CCGGUa -3'
miRNA:   3'- -AGACCaUGu--UUGCGuuGCGGuGGCCG- -5'
14309 5' -53 NC_003521.1 + 232793 0.68 0.978972
Target:  5'- gCUGGUu----CuCAACGCCuCCGGCg -3'
miRNA:   3'- aGACCAuguuuGcGUUGCGGuGGCCG- -5'
14309 5' -53 NC_003521.1 + 232384 0.66 0.991863
Target:  5'- --aGGUcCAccgucucGCGCuggcuGCGCCugCGGCa -3'
miRNA:   3'- agaCCAuGUu------UGCGu----UGCGGugGCCG- -5'
14309 5' -53 NC_003521.1 + 230323 0.66 0.993799
Target:  5'- cCUGGgggGCc-ACGCcauCcCCGCCGGCg -3'
miRNA:   3'- aGACCa--UGuuUGCGuu-GcGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 228981 0.74 0.771508
Target:  5'- --aGGUGCGcGgGCGGCGCaggACCGGCa -3'
miRNA:   3'- agaCCAUGUuUgCGUUGCGg--UGGCCG- -5'
14309 5' -53 NC_003521.1 + 226340 0.72 0.878764
Target:  5'- -aUGGUGCGcGCGCcccgcggguAGCGCCGCgggagCGGCg -3'
miRNA:   3'- agACCAUGUuUGCG---------UUGCGGUG-----GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.