Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14311 | 3' | -50.2 | NC_003521.1 | + | 12515 | 1.08 | 0.017955 |
Target: 5'- aUAACUGUCCUCAUCACCACGAGAUCAu -3' miRNA: 3'- -AUUGACAGGAGUAGUGGUGCUCUAGU- -5' |
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14311 | 3' | -50.2 | NC_003521.1 | + | 112880 | 0.72 | 0.936119 |
Target: 5'- cGGCUGgCCgacgaCGUCAgCCGCGAGAUCGc -3' miRNA: 3'- aUUGACaGGa----GUAGU-GGUGCUCUAGU- -5' |
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14311 | 3' | -50.2 | NC_003521.1 | + | 23639 | 0.72 | 0.949972 |
Target: 5'- --cCUG-CCUCAUCACCACGA--UCGc -3' miRNA: 3'- auuGACaGGAGUAGUGGUGCUcuAGU- -5' |
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14311 | 3' | -50.2 | NC_003521.1 | + | 211427 | 0.71 | 0.95762 |
Target: 5'- gGACUGUCCUCGUCgucguccuccucgGCCuCGcGGUCGg -3' miRNA: 3'- aUUGACAGGAGUAG-------------UGGuGCuCUAGU- -5' |
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14311 | 3' | -50.2 | NC_003521.1 | + | 32486 | 0.71 | 0.96831 |
Target: 5'- gAACUcGUCgUCGUCGCCGCGAcaGUCGu -3' miRNA: 3'- aUUGA-CAGgAGUAGUGGUGCUc-UAGU- -5' |
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14311 | 3' | -50.2 | NC_003521.1 | + | 223866 | 0.71 | 0.971307 |
Target: 5'- cGGCUGUcCCUCGggUACCACGuuGUCGg -3' miRNA: 3'- aUUGACA-GGAGUa-GUGGUGCucUAGU- -5' |
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14311 | 3' | -50.2 | NC_003521.1 | + | 27614 | 0.7 | 0.974095 |
Target: 5'- ---gUGggCCUCAUCACCAUGuucaAGAUCAc -3' miRNA: 3'- auugACa-GGAGUAGUGGUGC----UCUAGU- -5' |
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14311 | 3' | -50.2 | NC_003521.1 | + | 93420 | 0.7 | 0.974095 |
Target: 5'- ----cGUCCUCAcCGCCACGcGAUCc -3' miRNA: 3'- auugaCAGGAGUaGUGGUGCuCUAGu -5' |
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14311 | 3' | -50.2 | NC_003521.1 | + | 157144 | 0.7 | 0.983302 |
Target: 5'- ----cGUCCacaaCGUCACgCGCGAGGUCAa -3' miRNA: 3'- auugaCAGGa---GUAGUG-GUGCUCUAGU- -5' |
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14311 | 3' | -50.2 | NC_003521.1 | + | 129204 | 0.7 | 0.983302 |
Target: 5'- cGGCgGUucgaCCUCGUCGCCGCGGGG-CGa -3' miRNA: 3'- aUUGaCA----GGAGUAGUGGUGCUCUaGU- -5' |
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14311 | 3' | -50.2 | NC_003521.1 | + | 197238 | 0.69 | 0.986851 |
Target: 5'- ----cGUCCUCGUCGCCGCccGAGGa-- -3' miRNA: 3'- auugaCAGGAGUAGUGGUG--CUCUagu -5' |
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14311 | 3' | -50.2 | NC_003521.1 | + | 226559 | 0.69 | 0.986851 |
Target: 5'- -cGCUGUCgUCAcgaucgCGCCGCG-GAUCGg -3' miRNA: 3'- auUGACAGgAGUa-----GUGGUGCuCUAGU- -5' |
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14311 | 3' | -50.2 | NC_003521.1 | + | 28015 | 0.69 | 0.988392 |
Target: 5'- -cGCUGUCCUCcuccagcaCGCCGCGGGGa-- -3' miRNA: 3'- auUGACAGGAGua------GUGGUGCUCUagu -5' |
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14311 | 3' | -50.2 | NC_003521.1 | + | 152857 | 0.69 | 0.991052 |
Target: 5'- ----aGUCCUCG-CGCCGCGAGGc-- -3' miRNA: 3'- auugaCAGGAGUaGUGGUGCUCUagu -5' |
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14311 | 3' | -50.2 | NC_003521.1 | + | 52718 | 0.69 | 0.991521 |
Target: 5'- aGugUGUCCUcCGUCgggucccaucgucacGCCAgGGGAUCGg -3' miRNA: 3'- aUugACAGGA-GUAG---------------UGGUgCUCUAGU- -5' |
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14311 | 3' | -50.2 | NC_003521.1 | + | 194881 | 0.68 | 0.992188 |
Target: 5'- -cACgGcCCUCuUCgACCGCGAGAUCGc -3' miRNA: 3'- auUGaCaGGAGuAG-UGGUGCUCUAGU- -5' |
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14311 | 3' | -50.2 | NC_003521.1 | + | 20770 | 0.68 | 0.993582 |
Target: 5'- -uGCUGUCCUUccuggcguuggcgcuGUCggGCCACGAGAa-- -3' miRNA: 3'- auUGACAGGAG---------------UAG--UGGUGCUCUagu -5' |
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14311 | 3' | -50.2 | NC_003521.1 | + | 46477 | 0.68 | 0.994115 |
Target: 5'- ----cGUCCUCGaacaUgGCCAUGGGGUCGg -3' miRNA: 3'- auugaCAGGAGU----AgUGGUGCUCUAGU- -5' |
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14311 | 3' | -50.2 | NC_003521.1 | + | 172904 | 0.68 | 0.994924 |
Target: 5'- gAGCUGUCCUCGUCcuuCUggGAGGa-- -3' miRNA: 3'- aUUGACAGGAGUAGu--GGugCUCUagu -5' |
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14311 | 3' | -50.2 | NC_003521.1 | + | 63611 | 0.67 | 0.996271 |
Target: 5'- cAGCUGUCCgaccugCAgcgcCGCCugGAGAa-- -3' miRNA: 3'- aUUGACAGGa-----GUa---GUGGugCUCUagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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