miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14311 3' -50.2 NC_003521.1 + 12515 1.08 0.017955
Target:  5'- aUAACUGUCCUCAUCACCACGAGAUCAu -3'
miRNA:   3'- -AUUGACAGGAGUAGUGGUGCUCUAGU- -5'
14311 3' -50.2 NC_003521.1 + 20770 0.68 0.993582
Target:  5'- -uGCUGUCCUUccuggcguuggcgcuGUCggGCCACGAGAa-- -3'
miRNA:   3'- auUGACAGGAG---------------UAG--UGGUGCUCUagu -5'
14311 3' -50.2 NC_003521.1 + 23639 0.72 0.949972
Target:  5'- --cCUG-CCUCAUCACCACGA--UCGc -3'
miRNA:   3'- auuGACaGGAGUAGUGGUGCUcuAGU- -5'
14311 3' -50.2 NC_003521.1 + 27614 0.7 0.974095
Target:  5'- ---gUGggCCUCAUCACCAUGuucaAGAUCAc -3'
miRNA:   3'- auugACa-GGAGUAGUGGUGC----UCUAGU- -5'
14311 3' -50.2 NC_003521.1 + 28015 0.69 0.988392
Target:  5'- -cGCUGUCCUCcuccagcaCGCCGCGGGGa-- -3'
miRNA:   3'- auUGACAGGAGua------GUGGUGCUCUagu -5'
14311 3' -50.2 NC_003521.1 + 32486 0.71 0.96831
Target:  5'- gAACUcGUCgUCGUCGCCGCGAcaGUCGu -3'
miRNA:   3'- aUUGA-CAGgAGUAGUGGUGCUc-UAGU- -5'
14311 3' -50.2 NC_003521.1 + 42677 0.66 0.99841
Target:  5'- cGACUcaGUCCUCAgaGCCGcCGAGAUg- -3'
miRNA:   3'- aUUGA--CAGGAGUagUGGU-GCUCUAgu -5'
14311 3' -50.2 NC_003521.1 + 46477 0.68 0.994115
Target:  5'- ----cGUCCUCGaacaUgGCCAUGGGGUCGg -3'
miRNA:   3'- auugaCAGGAGU----AgUGGUGCUCUAGU- -5'
14311 3' -50.2 NC_003521.1 + 52718 0.69 0.991521
Target:  5'- aGugUGUCCUcCGUCgggucccaucgucacGCCAgGGGAUCGg -3'
miRNA:   3'- aUugACAGGA-GUAG---------------UGGUgCUCUAGU- -5'
14311 3' -50.2 NC_003521.1 + 63558 0.66 0.999103
Target:  5'- gAGCcGcCCUCGUCACCugGguGGAUgAg -3'
miRNA:   3'- aUUGaCaGGAGUAGUGGugC--UCUAgU- -5'
14311 3' -50.2 NC_003521.1 + 63611 0.67 0.996271
Target:  5'- cAGCUGUCCgaccugCAgcgcCGCCugGAGAa-- -3'
miRNA:   3'- aUUGACAGGa-----GUa---GUGGugCUCUagu -5'
14311 3' -50.2 NC_003521.1 + 72871 0.67 0.998096
Target:  5'- cGGCgGUCgUCGUCACCGCaGGcUCAc -3'
miRNA:   3'- aUUGaCAGgAGUAGUGGUGcUCuAGU- -5'
14311 3' -50.2 NC_003521.1 + 78404 0.66 0.999103
Target:  5'- aGACgucggCCUCG-C-CCACGGGAUCAc -3'
miRNA:   3'- aUUGaca--GGAGUaGuGGUGCUCUAGU- -5'
14311 3' -50.2 NC_003521.1 + 93420 0.7 0.974095
Target:  5'- ----cGUCCUCAcCGCCACGcGAUCc -3'
miRNA:   3'- auugaCAGGAGUaGUGGUGCuCUAGu -5'
14311 3' -50.2 NC_003521.1 + 99236 0.67 0.996502
Target:  5'- gGGCUGUagcugacggugcgcgCgUCGUCGCgCGCGAGGUCc -3'
miRNA:   3'- aUUGACA---------------GgAGUAGUG-GUGCUCUAGu -5'
14311 3' -50.2 NC_003521.1 + 111593 0.67 0.997731
Target:  5'- gGACUGcgugguagucuUCCUC-UCGCCccgcggcgACGAGGUCGa -3'
miRNA:   3'- aUUGAC-----------AGGAGuAGUGG--------UGCUCUAGU- -5'
14311 3' -50.2 NC_003521.1 + 112880 0.72 0.936119
Target:  5'- cGGCUGgCCgacgaCGUCAgCCGCGAGAUCGc -3'
miRNA:   3'- aUUGACaGGa----GUAGU-GGUGCUCUAGU- -5'
14311 3' -50.2 NC_003521.1 + 124533 0.66 0.999252
Target:  5'- gAGCUGUCCUCcagCGCCagcuugcgcacguACGucacGAUCAg -3'
miRNA:   3'- aUUGACAGGAGua-GUGG-------------UGCu---CUAGU- -5'
14311 3' -50.2 NC_003521.1 + 129204 0.7 0.983302
Target:  5'- cGGCgGUucgaCCUCGUCGCCGCGGGG-CGa -3'
miRNA:   3'- aUUGaCA----GGAGUAGUGGUGCUCUaGU- -5'
14311 3' -50.2 NC_003521.1 + 137488 0.66 0.999103
Target:  5'- cGGCgUGUCg-CggCGCCGCGAGGUCu -3'
miRNA:   3'- aUUG-ACAGgaGuaGUGGUGCUCUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.