miRNA display CGI


Results 41 - 60 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14311 5' -53.6 NC_003521.1 + 123373 0.66 0.980355
Target:  5'- -aCAGCCgCACCGacaggcgGCUaGUCAGGCCg -3'
miRNA:   3'- aaGUUGGaGUGGCa------CGAcCGGUUUGG- -5'
14311 5' -53.6 NC_003521.1 + 234331 0.66 0.978122
Target:  5'- cUCuGCCgUCACCGccuccGCU-GCCGGACCu -3'
miRNA:   3'- aAGuUGG-AGUGGCa----CGAcCGGUUUGG- -5'
14311 5' -53.6 NC_003521.1 + 103852 0.66 0.978122
Target:  5'- cUCGGCCUCGuCCaG-GCUGGCgAucagcGCCg -3'
miRNA:   3'- aAGUUGGAGU-GG-CaCGACCGgUu----UGG- -5'
14311 5' -53.6 NC_003521.1 + 130455 0.66 0.978122
Target:  5'- -aCGGCCgaguuuuucggUCG-CGUGCUGGCCcAGCUa -3'
miRNA:   3'- aaGUUGG-----------AGUgGCACGACCGGuUUGG- -5'
14311 5' -53.6 NC_003521.1 + 25609 0.66 0.978122
Target:  5'- cUUCGcuACCuUCACCGggcuggcgcUGCUGGCgCGuGACCa -3'
miRNA:   3'- -AAGU--UGG-AGUGGC---------ACGACCG-GU-UUGG- -5'
14311 5' -53.6 NC_003521.1 + 66787 0.66 0.978122
Target:  5'- -gCAGCC-CA-CGUGCgGGCCAccGCCg -3'
miRNA:   3'- aaGUUGGaGUgGCACGaCCGGUu-UGG- -5'
14311 5' -53.6 NC_003521.1 + 22208 0.66 0.978122
Target:  5'- -aCcGCCgcgCGCUG-GC-GGCCGAACCg -3'
miRNA:   3'- aaGuUGGa--GUGGCaCGaCCGGUUUGG- -5'
14311 5' -53.6 NC_003521.1 + 18061 0.66 0.978122
Target:  5'- -cCGACCcCACCGacGCcgUGGCCGuAGCCc -3'
miRNA:   3'- aaGUUGGaGUGGCa-CG--ACCGGU-UUGG- -5'
14311 5' -53.6 NC_003521.1 + 171853 0.66 0.977889
Target:  5'- gUUgGACUUCAUgCGcaUGCUGGCCGucucccgGACCa -3'
miRNA:   3'- -AAgUUGGAGUG-GC--ACGACCGGU-------UUGG- -5'
14311 5' -53.6 NC_003521.1 + 239482 0.67 0.975707
Target:  5'- gUUCAGCCccaGCCG-GUUGGaCCGAuacaGCCg -3'
miRNA:   3'- -AAGUUGGag-UGGCaCGACC-GGUU----UGG- -5'
14311 5' -53.6 NC_003521.1 + 112867 0.67 0.975707
Target:  5'- -cCAGCUgcUC-CCGcgGCUGGCCGAcgacgucaGCCg -3'
miRNA:   3'- aaGUUGG--AGuGGCa-CGACCGGUU--------UGG- -5'
14311 5' -53.6 NC_003521.1 + 16495 0.67 0.975707
Target:  5'- gUCGACUcagcgcgagUCACCGUGacgggggcguCUGGCC--ACCa -3'
miRNA:   3'- aAGUUGG---------AGUGGCAC----------GACCGGuuUGG- -5'
14311 5' -53.6 NC_003521.1 + 37696 0.67 0.975707
Target:  5'- cUCGGCUccggcUCGCagaGUGCcuuUGGCCAGGCg -3'
miRNA:   3'- aAGUUGG-----AGUGg--CACG---ACCGGUUUGg -5'
14311 5' -53.6 NC_003521.1 + 39254 0.67 0.975707
Target:  5'- gUUCAGCCccaGCCG-GUUGGaCCGAuacaGCCg -3'
miRNA:   3'- -AAGUUGGag-UGGCaCGACC-GGUU----UGG- -5'
14311 5' -53.6 NC_003521.1 + 75230 0.67 0.975455
Target:  5'- cUgGAUCUCACCGUcacuuagGCUGG-CAGACg -3'
miRNA:   3'- aAgUUGGAGUGGCA-------CGACCgGUUUGg -5'
14311 5' -53.6 NC_003521.1 + 137001 0.67 0.973102
Target:  5'- aUCGGCaUCAgCGcgaGCUGGCCGAGgCCc -3'
miRNA:   3'- aAGUUGgAGUgGCa--CGACCGGUUU-GG- -5'
14311 5' -53.6 NC_003521.1 + 73557 0.67 0.973102
Target:  5'- cUCAaccACCUgGCCGUggugcgggcGCUGGUCAugaacgagGACCu -3'
miRNA:   3'- aAGU---UGGAgUGGCA---------CGACCGGU--------UUGG- -5'
14311 5' -53.6 NC_003521.1 + 27371 0.67 0.973102
Target:  5'- -cCAGgCUCcaGCCG-GggGGCCAGGCCa -3'
miRNA:   3'- aaGUUgGAG--UGGCaCgaCCGGUUUGG- -5'
14311 5' -53.6 NC_003521.1 + 151075 0.67 0.973102
Target:  5'- cUUCGGCCgCGCCG-GCUG-CCGucACCg -3'
miRNA:   3'- -AAGUUGGaGUGGCaCGACcGGUu-UGG- -5'
14311 5' -53.6 NC_003521.1 + 112219 0.67 0.973102
Target:  5'- cUCAGCCccgagaaCGCCGUGaC-GGCCAucGCCu -3'
miRNA:   3'- aAGUUGGa------GUGGCAC-GaCCGGUu-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.