miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1432 3' -53.4 NC_001335.1 + 42242 0.66 0.836761
Target:  5'- cGCaGCAGGAAUcgUGCCGgucGAGGAUUGc -3'
miRNA:   3'- cCGcUGUCCUUG--AUGGU---CUCCUGACc -5'
1432 3' -53.4 NC_001335.1 + 41570 0.66 0.827741
Target:  5'- gGGuCGGCGGGGgauccGCUACCcccGGuCUGGg -3'
miRNA:   3'- -CC-GCUGUCCU-----UGAUGGucuCCuGACC- -5'
1432 3' -53.4 NC_001335.1 + 23719 0.66 0.826827
Target:  5'- aGGCGGCGGGGGuaaaggcauggccCUGgCuGAcGGCUGGg -3'
miRNA:   3'- -CCGCUGUCCUU-------------GAUgGuCUcCUGACC- -5'
1432 3' -53.4 NC_001335.1 + 13448 0.66 0.818512
Target:  5'- uGGCG-CGGGucGACUACacgaucaAGAGGuACUGa -3'
miRNA:   3'- -CCGCuGUCC--UUGAUGg------UCUCC-UGACc -5'
1432 3' -53.4 NC_001335.1 + 51406 0.66 0.799469
Target:  5'- -cCGACucaaaccuuuAGuucGCUGCCAGAGGACUGa -3'
miRNA:   3'- ccGCUG----------UCcu-UGAUGGUCUCCUGACc -5'
1432 3' -53.4 NC_001335.1 + 17494 0.66 0.799469
Target:  5'- aGGCaGC-GGAACUGCCGG-GGAUg-- -3'
miRNA:   3'- -CCGcUGuCCUUGAUGGUCuCCUGacc -5'
1432 3' -53.4 NC_001335.1 + 44163 0.67 0.779717
Target:  5'- cGGCGAU---GACUugCGguGAGGugUGGa -3'
miRNA:   3'- -CCGCUGuccUUGAugGU--CUCCugACC- -5'
1432 3' -53.4 NC_001335.1 + 21292 0.67 0.779717
Target:  5'- uGGCucCGGGAGCUGgCugauGAGGAC-GGc -3'
miRNA:   3'- -CCGcuGUCCUUGAUgGu---CUCCUGaCC- -5'
1432 3' -53.4 NC_001335.1 + 6700 0.67 0.769603
Target:  5'- uGGUGAguGGuauCUGCCuGAGaagacccucGGCUGGg -3'
miRNA:   3'- -CCGCUguCCuu-GAUGGuCUC---------CUGACC- -5'
1432 3' -53.4 NC_001335.1 + 2566 0.67 0.769603
Target:  5'- -aCGGCGGGAACUuagagcCCGGAGGAa--- -3'
miRNA:   3'- ccGCUGUCCUUGAu-----GGUCUCCUgacc -5'
1432 3' -53.4 NC_001335.1 + 25601 0.67 0.769603
Target:  5'- gGGCGACGGGAaucgaacccGCguaGCUAGuuuGGAagaaUGGg -3'
miRNA:   3'- -CCGCUGUCCU---------UGa--UGGUCu--CCUg---ACC- -5'
1432 3' -53.4 NC_001335.1 + 17204 0.67 0.738445
Target:  5'- aGCGcCGGGAugUGCgGGGccaGACUGGu -3'
miRNA:   3'- cCGCuGUCCUugAUGgUCUc--CUGACC- -5'
1432 3' -53.4 NC_001335.1 + 29408 0.68 0.695435
Target:  5'- cGGCG-CAGacGCUGCCGucgucGGACUGGa -3'
miRNA:   3'- -CCGCuGUCcuUGAUGGUcu---CCUGACC- -5'
1432 3' -53.4 NC_001335.1 + 1211 0.68 0.695435
Target:  5'- aGGCGGCaaGGGAACggcagcgccggUACCGGAGGcgucACcGGu -3'
miRNA:   3'- -CCGCUG--UCCUUG-----------AUGGUCUCC----UGaCC- -5'
1432 3' -53.4 NC_001335.1 + 24886 0.69 0.673512
Target:  5'- cGCGACguagAGGcGCUgacGCCuGAGGAgCUGGa -3'
miRNA:   3'- cCGCUG----UCCuUGA---UGGuCUCCU-GACC- -5'
1432 3' -53.4 NC_001335.1 + 50191 0.69 0.662485
Target:  5'- aGGCcgucgcguccgGGCAGGAGaagccuugACCGGAGGGCaGGc -3'
miRNA:   3'- -CCG-----------CUGUCCUUga------UGGUCUCCUGaCC- -5'
1432 3' -53.4 NC_001335.1 + 33286 0.69 0.65143
Target:  5'- uGGCGuucCAGGcgcuCUACCAGAuGuGCUGGg -3'
miRNA:   3'- -CCGCu--GUCCuu--GAUGGUCU-CcUGACC- -5'
1432 3' -53.4 NC_001335.1 + 26762 0.69 0.640356
Target:  5'- uGCGGCucuGGAGCUugUuGAGGuuccuCUGGg -3'
miRNA:   3'- cCGCUGu--CCUUGAugGuCUCCu----GACC- -5'
1432 3' -53.4 NC_001335.1 + 21931 0.69 0.640356
Target:  5'- gGGCGACuGGAGCUucgGCC--AGGACUc- -3'
miRNA:   3'- -CCGCUGuCCUUGA---UGGucUCCUGAcc -5'
1432 3' -53.4 NC_001335.1 + 22379 0.7 0.596087
Target:  5'- aGCGccuGCAGGAGCauguCCAGAuGGuCUGGa -3'
miRNA:   3'- cCGC---UGUCCUUGau--GGUCU-CCuGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.