miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14326 3' -57 NC_003521.1 + 145597 0.66 0.927256
Target:  5'- cGgCGGCCGUggccucgcugcuGCAG-UCGCacccggugCCGGGCGu -3'
miRNA:   3'- -CgGUCGGCA------------UGUCaAGCGa-------GGUCCGC- -5'
14326 3' -57 NC_003521.1 + 34673 0.66 0.927256
Target:  5'- gGCCAGCuCGUagagGCAGUccuccugCGCgUCgUAGGCGa -3'
miRNA:   3'- -CGGUCG-GCA----UGUCAa------GCG-AG-GUCCGC- -5'
14326 3' -57 NC_003521.1 + 119928 0.66 0.927256
Target:  5'- uGCC-GCUG-ACGGgcaccCGCUCCAGGgGc -3'
miRNA:   3'- -CGGuCGGCaUGUCaa---GCGAGGUCCgC- -5'
14326 3' -57 NC_003521.1 + 110545 0.66 0.927256
Target:  5'- gGCgGGCCGaUGCAcc-UGUUCCGGGUGa -3'
miRNA:   3'- -CGgUCGGC-AUGUcaaGCGAGGUCCGC- -5'
14326 3' -57 NC_003521.1 + 30941 0.66 0.927256
Target:  5'- cGCCGuGCCGUA-GGUagUGCcaagCCAGGCGc -3'
miRNA:   3'- -CGGU-CGGCAUgUCAa-GCGa---GGUCCGC- -5'
14326 3' -57 NC_003521.1 + 198276 0.66 0.944645
Target:  5'- aGCCAGCCGggcgucGCGGaggaccgcugggggGCUCCGGGUu -3'
miRNA:   3'- -CGGUCGGCa-----UGUCaag-----------CGAGGUCCGc -5'
14326 3' -57 NC_003521.1 + 116645 0.66 0.937031
Target:  5'- cCCAGCCG-GCAGg-CGCa-CAGGCGc -3'
miRNA:   3'- cGGUCGGCaUGUCaaGCGagGUCCGC- -5'
14326 3' -57 NC_003521.1 + 224793 0.66 0.932254
Target:  5'- aCCAcGUCGUGCGGgaCGCgCguGGCGu -3'
miRNA:   3'- cGGU-CGGCAUGUCaaGCGaGguCCGC- -5'
14326 3' -57 NC_003521.1 + 131712 0.66 0.93371
Target:  5'- uGCCGGCCGUGguGUgcaacagcaaucgUCGCuggacgUgcacggccuggaggaCCAGGCGg -3'
miRNA:   3'- -CGGUCGGCAUguCA-------------AGCG------A---------------GGUCCGC- -5'
14326 3' -57 NC_003521.1 + 66780 0.66 0.937031
Target:  5'- cGCCGGCCcagacggACGGUUCGCU---GGUGa -3'
miRNA:   3'- -CGGUCGGca-----UGUCAAGCGAgguCCGC- -5'
14326 3' -57 NC_003521.1 + 224750 0.66 0.941587
Target:  5'- gGCCAGCgCGU-CGGg--GCUCC-GGCa -3'
miRNA:   3'- -CGGUCG-GCAuGUCaagCGAGGuCCGc -5'
14326 3' -57 NC_003521.1 + 201229 0.66 0.93888
Target:  5'- gGCCGGCCGUACGGcuucuacgCGCgcaucacgCCGcgcagccagauggccGGCGu -3'
miRNA:   3'- -CGGUCGGCAUGUCaa------GCGa-------GGU---------------CCGC- -5'
14326 3' -57 NC_003521.1 + 165870 0.66 0.937031
Target:  5'- uCCAGCgGUGCAcg-UGCUC-GGGCGg -3'
miRNA:   3'- cGGUCGgCAUGUcaaGCGAGgUCCGC- -5'
14326 3' -57 NC_003521.1 + 42376 0.67 0.916594
Target:  5'- cGCCAGCCG-ACGGccaaUCGCgu--GGCGu -3'
miRNA:   3'- -CGGUCGGCaUGUCa---AGCGagguCCGC- -5'
14326 3' -57 NC_003521.1 + 128503 0.67 0.922036
Target:  5'- cGCCGGCCugcgACAGcgagUCGCUgggCAGGUGc -3'
miRNA:   3'- -CGGUCGGca--UGUCa---AGCGAg--GUCCGC- -5'
14326 3' -57 NC_003521.1 + 76051 0.67 0.916594
Target:  5'- uGCCcGCCGcgucacUAUGGUUCGC-CC-GGCGa -3'
miRNA:   3'- -CGGuCGGC------AUGUCAAGCGaGGuCCGC- -5'
14326 3' -57 NC_003521.1 + 223067 0.67 0.916594
Target:  5'- cGCCGGCgGUACGGccaGUUCCccGGCc -3'
miRNA:   3'- -CGGUCGgCAUGUCaagCGAGGu-CCGc -5'
14326 3' -57 NC_003521.1 + 155488 0.67 0.90505
Target:  5'- cGCCGGCCugcgGCGGgcCGCgggCCAaGGCu -3'
miRNA:   3'- -CGGUCGGca--UGUCaaGCGa--GGU-CCGc -5'
14326 3' -57 NC_003521.1 + 39764 0.67 0.922036
Target:  5'- cGCCAGCa----GGaacCGCUCCGGGCu -3'
miRNA:   3'- -CGGUCGgcaugUCaa-GCGAGGUCCGc -5'
14326 3' -57 NC_003521.1 + 107132 0.67 0.92415
Target:  5'- uCCAGCuCGUACAGgcacaccUGacagagauagaaguuCUCCAGGCGg -3'
miRNA:   3'- cGGUCG-GCAUGUCaa-----GC---------------GAGGUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.