miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14326 3' -57 NC_003521.1 + 195574 0.65 0.948421
Target:  5'- aCCAGCa--GCGGUUaaccgacgcuacaGCUCCAGGUGc -3'
miRNA:   3'- cGGUCGgcaUGUCAAg------------CGAGGUCCGC- -5'
14326 3' -57 NC_003521.1 + 106444 0.66 0.931764
Target:  5'- cGCUGGCCGUggaGCAGUUCaucucgcGCUucaacUCGGGCu -3'
miRNA:   3'- -CGGUCGGCA---UGUCAAG-------CGA-----GGUCCGc -5'
14326 3' -57 NC_003521.1 + 66780 0.66 0.937031
Target:  5'- cGCCGGCCcagacggACGGUUCGCU---GGUGa -3'
miRNA:   3'- -CGGUCGGca-----UGUCAAGCGAgguCCGC- -5'
14326 3' -57 NC_003521.1 + 240637 0.66 0.945924
Target:  5'- gGCCGGCCGguCGGacgUGUUUCGGGCc -3'
miRNA:   3'- -CGGUCGGCauGUCaa-GCGAGGUCCGc -5'
14326 3' -57 NC_003521.1 + 201229 0.66 0.93888
Target:  5'- gGCCGGCCGUACGGcuucuacgCGCgcaucacgCCGcgcagccagauggccGGCGu -3'
miRNA:   3'- -CGGUCGGCAUGUCaa------GCGa-------GGU---------------CCGC- -5'
14326 3' -57 NC_003521.1 + 38794 0.66 0.945924
Target:  5'- aCCAGCgGUugAGUggacaaCGCagCAGGUGu -3'
miRNA:   3'- cGGUCGgCAugUCAa-----GCGagGUCCGC- -5'
14326 3' -57 NC_003521.1 + 200316 0.66 0.945924
Target:  5'- gGCCGGCCGguCGGacgUGUUUCGGGCc -3'
miRNA:   3'- -CGGUCGGCauGUCaa-GCGAGGUCCGc -5'
14326 3' -57 NC_003521.1 + 25572 0.66 0.932254
Target:  5'- uCCAGCUGUugGCGGccUCGCUCUucacccugacGGGCu -3'
miRNA:   3'- cGGUCGGCA--UGUCa-AGCGAGG----------UCCGc -5'
14326 3' -57 NC_003521.1 + 141933 0.66 0.939791
Target:  5'- cGCCuGaCCGUGCAGcgCGUgggcgcccaccugCUGGGCGa -3'
miRNA:   3'- -CGGuC-GGCAUGUCaaGCGa------------GGUCCGC- -5'
14326 3' -57 NC_003521.1 + 165870 0.66 0.937031
Target:  5'- uCCAGCgGUGCAcg-UGCUC-GGGCGg -3'
miRNA:   3'- cGGUCGgCAUGUcaaGCGAGgUCCGC- -5'
14326 3' -57 NC_003521.1 + 58403 0.66 0.931764
Target:  5'- uGCCgcGGCCGcgugaugcgGCGGUUgacgaagccgcagCGCUgCCGGGCGa -3'
miRNA:   3'- -CGG--UCGGCa--------UGUCAA-------------GCGA-GGUCCGC- -5'
14326 3' -57 NC_003521.1 + 224750 0.66 0.941587
Target:  5'- gGCCAGCgCGU-CGGg--GCUCC-GGCa -3'
miRNA:   3'- -CGGUCG-GCAuGUCaagCGAGGuCCGc -5'
14326 3' -57 NC_003521.1 + 34673 0.66 0.927256
Target:  5'- gGCCAGCuCGUagagGCAGUccuccugCGCgUCgUAGGCGa -3'
miRNA:   3'- -CGGUCG-GCA----UGUCAa------GCG-AG-GUCCGC- -5'
14326 3' -57 NC_003521.1 + 30941 0.66 0.927256
Target:  5'- cGCCGuGCCGUA-GGUagUGCcaagCCAGGCGc -3'
miRNA:   3'- -CGGU-CGGCAUgUCAa-GCGa---GGUCCGC- -5'
14326 3' -57 NC_003521.1 + 145597 0.66 0.927256
Target:  5'- cGgCGGCCGUggccucgcugcuGCAG-UCGCacccggugCCGGGCGu -3'
miRNA:   3'- -CgGUCGGCA------------UGUCaAGCGa-------GGUCCGC- -5'
14326 3' -57 NC_003521.1 + 221921 0.66 0.932254
Target:  5'- gGCCAGgCGUGCgAGgggaagaUGCacgacacgUCCAGGCGg -3'
miRNA:   3'- -CGGUCgGCAUG-UCaa-----GCG--------AGGUCCGC- -5'
14326 3' -57 NC_003521.1 + 224793 0.66 0.932254
Target:  5'- aCCAcGUCGUGCGGgaCGCgCguGGCGu -3'
miRNA:   3'- cGGU-CGGCAUGUCaaGCGaGguCCGC- -5'
14326 3' -57 NC_003521.1 + 119928 0.66 0.927256
Target:  5'- uGCC-GCUG-ACGGgcaccCGCUCCAGGgGc -3'
miRNA:   3'- -CGGuCGGCaUGUCaa---GCGAGGUCCgC- -5'
14326 3' -57 NC_003521.1 + 131712 0.66 0.93371
Target:  5'- uGCCGGCCGUGguGUgcaacagcaaucgUCGCuggacgUgcacggccuggaggaCCAGGCGg -3'
miRNA:   3'- -CGGUCGGCAUguCA-------------AGCG------A---------------GGUCCGC- -5'
14326 3' -57 NC_003521.1 + 110545 0.66 0.927256
Target:  5'- gGCgGGCCGaUGCAcc-UGUUCCGGGUGa -3'
miRNA:   3'- -CGgUCGGC-AUGUcaaGCGAGGUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.