miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14326 3' -57 NC_003521.1 + 88 0.66 0.945924
Target:  5'- gGCCGGCCGguCGGacgUGUUUCGGGCc -3'
miRNA:   3'- -CGGUCGGCauGUCaa-GCGAGGUCCGc -5'
14326 3' -57 NC_003521.1 + 452 0.74 0.553357
Target:  5'- aGCCAGCCGgugagGCAGcgUUGCgUCaCAGGCu -3'
miRNA:   3'- -CGGUCGGCa----UGUCa-AGCG-AG-GUCCGc -5'
14326 3' -57 NC_003521.1 + 1001 0.66 0.93888
Target:  5'- gGCCGGCCGUACGGcuucuacgCGCgcaucacgCCGcgcagccagauggccGGCGu -3'
miRNA:   3'- -CGGUCGGCAUGUCaa------GCGa-------GGU---------------CCGC- -5'
14326 3' -57 NC_003521.1 + 4346 0.72 0.651357
Target:  5'- cGCCAccGCCGccgGCGGUUCGCUCaucGCGg -3'
miRNA:   3'- -CGGU--CGGCa--UGUCAAGCGAGgucCGC- -5'
14326 3' -57 NC_003521.1 + 4374 0.7 0.757065
Target:  5'- -gCGGCCGaGCAGguuccagaaGCUCCAGGUGc -3'
miRNA:   3'- cgGUCGGCaUGUCaag------CGAGGUCCGC- -5'
14326 3' -57 NC_003521.1 + 4582 0.67 0.892636
Target:  5'- cGCCGGCCuc-CGGUUUGCUaaCGGGCc -3'
miRNA:   3'- -CGGUCGGcauGUCAAGCGAg-GUCCGc -5'
14326 3' -57 NC_003521.1 + 6031 0.67 0.910931
Target:  5'- cGUC-GUCGUACcacUCGCUCuCGGGCGg -3'
miRNA:   3'- -CGGuCGGCAUGucaAGCGAG-GUCCGC- -5'
14326 3' -57 NC_003521.1 + 13372 0.67 0.89895
Target:  5'- gGCCGGaauGUGCGGUUUuuaaaaUCCGGGCGg -3'
miRNA:   3'- -CGGUCgg-CAUGUCAAGcg----AGGUCCGC- -5'
14326 3' -57 NC_003521.1 + 21561 0.66 0.941587
Target:  5'- uGCCAGCCccUGCGGgcccUGCUCUAcccGGCGc -3'
miRNA:   3'- -CGGUCGGc-AUGUCaa--GCGAGGU---CCGC- -5'
14326 3' -57 NC_003521.1 + 25572 0.66 0.932254
Target:  5'- uCCAGCUGUugGCGGccUCGCUCUucacccugacGGGCu -3'
miRNA:   3'- cGGUCGGCA--UGUCa-AGCGAGG----------UCCGc -5'
14326 3' -57 NC_003521.1 + 25816 1.1 0.003399
Target:  5'- uGCCAGCCGUACAGUUCGCUCCAGGCGu -3'
miRNA:   3'- -CGGUCGGCAUGUCAAGCGAGGUCCGC- -5'
14326 3' -57 NC_003521.1 + 25897 0.69 0.810202
Target:  5'- uGCCcGCUGUACAuGUUC-CgCCAGGUGg -3'
miRNA:   3'- -CGGuCGGCAUGU-CAAGcGaGGUCCGC- -5'
14326 3' -57 NC_003521.1 + 30223 0.74 0.563029
Target:  5'- gGCCGGCCGUugGcGUcgCGCUgCAGGUc -3'
miRNA:   3'- -CGGUCGGCAugU-CAa-GCGAgGUCCGc -5'
14326 3' -57 NC_003521.1 + 30941 0.66 0.927256
Target:  5'- cGCCGuGCCGUA-GGUagUGCcaagCCAGGCGc -3'
miRNA:   3'- -CGGU-CGGCAUgUCAa-GCGa---GGUCCGC- -5'
14326 3' -57 NC_003521.1 + 34673 0.66 0.927256
Target:  5'- gGCCAGCuCGUagagGCAGUccuccugCGCgUCgUAGGCGa -3'
miRNA:   3'- -CGGUCG-GCA----UGUCAa------GCG-AG-GUCCGC- -5'
14326 3' -57 NC_003521.1 + 38794 0.66 0.945924
Target:  5'- aCCAGCgGUugAGUggacaaCGCagCAGGUGu -3'
miRNA:   3'- cGGUCGgCAugUCAa-----GCGagGUCCGC- -5'
14326 3' -57 NC_003521.1 + 39764 0.67 0.922036
Target:  5'- cGCCAGCa----GGaacCGCUCCGGGCu -3'
miRNA:   3'- -CGGUCGgcaugUCaa-GCGAGGUCCGc -5'
14326 3' -57 NC_003521.1 + 40774 0.74 0.553357
Target:  5'- aGCCAGCCGgugagGCAGcgUUGCgUCaCAGGCu -3'
miRNA:   3'- -CGGUCGGCa----UGUCa-AGCG-AG-GUCCGc -5'
14326 3' -57 NC_003521.1 + 42376 0.67 0.916594
Target:  5'- cGCCAGCCG-ACGGccaaUCGCgu--GGCGu -3'
miRNA:   3'- -CGGUCGGCaUGUCa---AGCGagguCCGC- -5'
14326 3' -57 NC_003521.1 + 44068 0.71 0.738448
Target:  5'- cGCCGGCCGggGCAGcagaCGgUgCAGGCGc -3'
miRNA:   3'- -CGGUCGGCa-UGUCaa--GCgAgGUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.