miRNA display CGI


Results 1 - 20 of 109 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14326 3' -57 NC_003521.1 + 25816 1.1 0.003399
Target:  5'- uGCCAGCCGUACAGUUCGCUCCAGGCGu -3'
miRNA:   3'- -CGGUCGGCAUGUCAAGCGAGGUCCGC- -5'
14326 3' -57 NC_003521.1 + 224403 0.79 0.302827
Target:  5'- gGCCAGCCgGUACAccUCGCcggCCAGGCGc -3'
miRNA:   3'- -CGGUCGG-CAUGUcaAGCGa--GGUCCGC- -5'
14326 3' -57 NC_003521.1 + 102916 0.79 0.32641
Target:  5'- cGCCAGCCacggGUACGGUuugagggccgaggcgUCGCggUCCAGGCGc -3'
miRNA:   3'- -CGGUCGG----CAUGUCA---------------AGCG--AGGUCCGC- -5'
14326 3' -57 NC_003521.1 + 139949 0.77 0.391981
Target:  5'- gGCCAGCuCGUcCAGggCGCUCUugAGGCGc -3'
miRNA:   3'- -CGGUCG-GCAuGUCaaGCGAGG--UCCGC- -5'
14326 3' -57 NC_003521.1 + 220108 0.77 0.409245
Target:  5'- cGCCAGCgGUACGGgUCGCguccgcccagaaaggCCAGGCc -3'
miRNA:   3'- -CGGUCGgCAUGUCaAGCGa--------------GGUCCGc -5'
14326 3' -57 NC_003521.1 + 57608 0.75 0.515223
Target:  5'- aGUCAG-CGUGCcGUcgCGCUCCAGGCa -3'
miRNA:   3'- -CGGUCgGCAUGuCAa-GCGAGGUCCGc -5'
14326 3' -57 NC_003521.1 + 452 0.74 0.553357
Target:  5'- aGCCAGCCGgugagGCAGcgUUGCgUCaCAGGCu -3'
miRNA:   3'- -CGGUCGGCa----UGUCa-AGCG-AG-GUCCGc -5'
14326 3' -57 NC_003521.1 + 40774 0.74 0.553357
Target:  5'- aGCCAGCCGgugagGCAGcgUUGCgUCaCAGGCu -3'
miRNA:   3'- -CGGUCGGCa----UGUCa-AGCG-AG-GUCCGc -5'
14326 3' -57 NC_003521.1 + 211976 0.74 0.553357
Target:  5'- uGCCGcGCCGccGCAGcUCGUcgUCCAGGCGc -3'
miRNA:   3'- -CGGU-CGGCa-UGUCaAGCG--AGGUCCGC- -5'
14326 3' -57 NC_003521.1 + 30223 0.74 0.563029
Target:  5'- gGCCGGCCGUugGcGUcgCGCUgCAGGUc -3'
miRNA:   3'- -CGGUCGGCAugU-CAa-GCGAgGUCCGc -5'
14326 3' -57 NC_003521.1 + 153490 0.74 0.572745
Target:  5'- uGCCcuuGCCGcGCAGcugCGcCUCCAGGCGc -3'
miRNA:   3'- -CGGu--CGGCaUGUCaa-GC-GAGGUCCGC- -5'
14326 3' -57 NC_003521.1 + 49805 0.73 0.622776
Target:  5'- uGCCGcccgaauggcugggcGCCGUGCAGUgCGCcgugcagacggccgUCCAGGUGg -3'
miRNA:   3'- -CGGU---------------CGGCAUGUCAaGCG--------------AGGUCCGC- -5'
14326 3' -57 NC_003521.1 + 151673 0.73 0.631648
Target:  5'- cCCAGCCGUccagggucuuGCGGUcgUCaGCUUCAGGCu -3'
miRNA:   3'- cGGUCGGCA----------UGUCA--AG-CGAGGUCCGc -5'
14326 3' -57 NC_003521.1 + 177479 0.73 0.631648
Target:  5'- uGCgCGGCCGUggaggugggaucGCAG-UCGCucUCCAGGCa -3'
miRNA:   3'- -CG-GUCGGCA------------UGUCaAGCG--AGGUCCGc -5'
14326 3' -57 NC_003521.1 + 91030 0.72 0.641506
Target:  5'- gGCCGGCCGUucGCGGaaCGC-CguGGCGu -3'
miRNA:   3'- -CGGUCGGCA--UGUCaaGCGaGguCCGC- -5'
14326 3' -57 NC_003521.1 + 4346 0.72 0.651357
Target:  5'- cGCCAccGCCGccgGCGGUUCGCUCaucGCGg -3'
miRNA:   3'- -CGGU--CGGCa--UGUCAAGCGAGgucCGC- -5'
14326 3' -57 NC_003521.1 + 166998 0.72 0.651357
Target:  5'- cUCGGCCGU-CAGcgCG-UCCAGGCGg -3'
miRNA:   3'- cGGUCGGCAuGUCaaGCgAGGUCCGC- -5'
14326 3' -57 NC_003521.1 + 110759 0.72 0.661194
Target:  5'- uCCAGCCGUcggUAGUagGCUCCAGGg- -3'
miRNA:   3'- cGGUCGGCAu--GUCAagCGAGGUCCgc -5'
14326 3' -57 NC_003521.1 + 174471 0.72 0.690543
Target:  5'- cGCCGGCCacgcgaGCGGgauccagUUGCUgCCAGGCGg -3'
miRNA:   3'- -CGGUCGGca----UGUCa------AGCGA-GGUCCGC- -5'
14326 3' -57 NC_003521.1 + 177750 0.72 0.690543
Target:  5'- uCCAGCgGUACGGUaCGCUgCCcguGGCGc -3'
miRNA:   3'- cGGUCGgCAUGUCAaGCGA-GGu--CCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.