miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14326 3' -57 NC_003521.1 + 218593 0.69 0.826797
Target:  5'- cGUCAGCCagugaaagagGUACGGUUCGgCcgCCAGcGCGc -3'
miRNA:   3'- -CGGUCGG----------CAUGUCAAGC-Ga-GGUC-CGC- -5'
14326 3' -57 NC_003521.1 + 57402 0.71 0.700246
Target:  5'- cGCCAcagcGCCGUGCGGUcgcccaccgucUCGCggaCGGGCu -3'
miRNA:   3'- -CGGU----CGGCAUGUCA-----------AGCGag-GUCCGc -5'
14326 3' -57 NC_003521.1 + 218516 0.71 0.720441
Target:  5'- gGCCAGCaggcagaccgugaagGUGCAGgagaGCUgCCAGGCGa -3'
miRNA:   3'- -CGGUCGg--------------CAUGUCaag-CGA-GGUCCGC- -5'
14326 3' -57 NC_003521.1 + 112788 0.71 0.747804
Target:  5'- uGCUGGCCGccUACGGgcacgCGCUCUGGGaCGg -3'
miRNA:   3'- -CGGUCGGC--AUGUCaa---GCGAGGUCC-GC- -5'
14326 3' -57 NC_003521.1 + 89826 0.7 0.757065
Target:  5'- uGUCGGCCG-ACGGcguUUCGUUCCgAGGCc -3'
miRNA:   3'- -CGGUCGGCaUGUC---AAGCGAGG-UCCGc -5'
14326 3' -57 NC_003521.1 + 214375 0.7 0.782428
Target:  5'- gGCCAcGCCGuUGCAGgccacgaacagCGC-CCAGGUGa -3'
miRNA:   3'- -CGGU-CGGC-AUGUCaa---------GCGaGGUCCGC- -5'
14326 3' -57 NC_003521.1 + 115383 0.7 0.801676
Target:  5'- gGCCGGCaUGUGCAGggCGC---GGGCGg -3'
miRNA:   3'- -CGGUCG-GCAUGUCaaGCGaggUCCGC- -5'
14326 3' -57 NC_003521.1 + 224575 0.69 0.810202
Target:  5'- aGCgCAGCCGcaggcugaggUACAuUUCGCacucggCCAGGCGg -3'
miRNA:   3'- -CG-GUCGGC----------AUGUcAAGCGa-----GGUCCGC- -5'
14326 3' -57 NC_003521.1 + 25897 0.69 0.810202
Target:  5'- uGCCcGCUGUACAuGUUC-CgCCAGGUGg -3'
miRNA:   3'- -CGGuCGGCAUGU-CAAGcGaGGUCCGC- -5'
14326 3' -57 NC_003521.1 + 177750 0.72 0.690543
Target:  5'- uCCAGCgGUACGGUaCGCUgCCcguGGCGc -3'
miRNA:   3'- cGGUCGgCAUGUCAaGCGA-GGu--CCGC- -5'
14326 3' -57 NC_003521.1 + 110759 0.72 0.661194
Target:  5'- uCCAGCCGUcggUAGUagGCUCCAGGg- -3'
miRNA:   3'- cGGUCGGCAu--GUCAagCGAGGUCCgc -5'
14326 3' -57 NC_003521.1 + 4346 0.72 0.651357
Target:  5'- cGCCAccGCCGccgGCGGUUCGCUCaucGCGg -3'
miRNA:   3'- -CGGU--CGGCa--UGUCAAGCGAGgucCGC- -5'
14326 3' -57 NC_003521.1 + 224403 0.79 0.302827
Target:  5'- gGCCAGCCgGUACAccUCGCcggCCAGGCGc -3'
miRNA:   3'- -CGGUCGG-CAUGUcaAGCGa--GGUCCGC- -5'
14326 3' -57 NC_003521.1 + 139949 0.77 0.391981
Target:  5'- gGCCAGCuCGUcCAGggCGCUCUugAGGCGc -3'
miRNA:   3'- -CGGUCG-GCAuGUCaaGCGAGG--UCCGC- -5'
14326 3' -57 NC_003521.1 + 220108 0.77 0.409245
Target:  5'- cGCCAGCgGUACGGgUCGCguccgcccagaaaggCCAGGCc -3'
miRNA:   3'- -CGGUCGgCAUGUCaAGCGa--------------GGUCCGc -5'
14326 3' -57 NC_003521.1 + 57608 0.75 0.515223
Target:  5'- aGUCAG-CGUGCcGUcgCGCUCCAGGCa -3'
miRNA:   3'- -CGGUCgGCAUGuCAa-GCGAGGUCCGc -5'
14326 3' -57 NC_003521.1 + 452 0.74 0.553357
Target:  5'- aGCCAGCCGgugagGCAGcgUUGCgUCaCAGGCu -3'
miRNA:   3'- -CGGUCGGCa----UGUCa-AGCG-AG-GUCCGc -5'
14326 3' -57 NC_003521.1 + 30223 0.74 0.563029
Target:  5'- gGCCGGCCGUugGcGUcgCGCUgCAGGUc -3'
miRNA:   3'- -CGGUCGGCAugU-CAa-GCGAgGUCCGc -5'
14326 3' -57 NC_003521.1 + 153490 0.74 0.572745
Target:  5'- uGCCcuuGCCGcGCAGcugCGcCUCCAGGCGc -3'
miRNA:   3'- -CGGu--CGGCaUGUCaa-GC-GAGGUCCGC- -5'
14326 3' -57 NC_003521.1 + 151673 0.73 0.631648
Target:  5'- cCCAGCCGUccagggucuuGCGGUcgUCaGCUUCAGGCu -3'
miRNA:   3'- cGGUCGGCA----------UGUCA--AG-CGAGGUCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.