miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14326 5' -55.5 NC_003521.1 + 202734 0.67 0.941613
Target:  5'- uGACGCGGcagGGGCGCGGggACCcCG-UGUGg -3'
miRNA:   3'- -CUGUGCC---UCUGCGCU--UGGuGCgACAC- -5'
14326 5' -55.5 NC_003521.1 + 37410 0.67 0.938883
Target:  5'- uACACGGGccugaccguguGGCGCGGcGCCgagccucugaaggugACGCUGUGg -3'
miRNA:   3'- cUGUGCCU-----------CUGCGCU-UGG---------------UGCGACAC- -5'
14326 5' -55.5 NC_003521.1 + 213610 0.67 0.937019
Target:  5'- aGGCuguUGGGGugGCGGucGCCGCGCa--- -3'
miRNA:   3'- -CUGu--GCCUCugCGCU--UGGUGCGacac -5'
14326 5' -55.5 NC_003521.1 + 181928 0.67 0.937019
Target:  5'- cGCAUGGAGACgggcuGCGAcucGCCGCGCc--- -3'
miRNA:   3'- cUGUGCCUCUG-----CGCU---UGGUGCGacac -5'
14326 5' -55.5 NC_003521.1 + 227862 0.67 0.936547
Target:  5'- aGACugGGAuucaugaggucccGACGCGGGauGCGCUGUu -3'
miRNA:   3'- -CUGugCCU-------------CUGCGCUUggUGCGACAc -5'
14326 5' -55.5 NC_003521.1 + 1352 0.68 0.927155
Target:  5'- cGGCugGGGcugaacgcGcCGCGGGCCAcCGCUGUc -3'
miRNA:   3'- -CUGugCCU--------CuGCGCUUGGU-GCGACAc -5'
14326 5' -55.5 NC_003521.1 + 103882 0.68 0.927155
Target:  5'- cGACAgGGGGAUGgGcuGCCGCGCgGUc -3'
miRNA:   3'- -CUGUgCCUCUGCgCu-UGGUGCGaCAc -5'
14326 5' -55.5 NC_003521.1 + 71275 0.68 0.927155
Target:  5'- --gGCGGAGGCGgGGGCCGCGg---- -3'
miRNA:   3'- cugUGCCUCUGCgCUUGGUGCgacac -5'
14326 5' -55.5 NC_003521.1 + 84217 0.68 0.921886
Target:  5'- aGCACc-AGGCGCGAgagGCCGCGCUGc- -3'
miRNA:   3'- cUGUGccUCUGCGCU---UGGUGCGACac -5'
14326 5' -55.5 NC_003521.1 + 95658 0.68 0.921886
Target:  5'- --gACGGAGuuGCGCGAcugGCCGCGCg--- -3'
miRNA:   3'- cugUGCCUC--UGCGCU---UGGUGCGacac -5'
14326 5' -55.5 NC_003521.1 + 174503 0.68 0.921886
Target:  5'- gGACuGCaGGGcCGCGAugGCCGCGCUGg- -3'
miRNA:   3'- -CUG-UGcCUCuGCGCU--UGGUGCGACac -5'
14326 5' -55.5 NC_003521.1 + 73384 0.68 0.91639
Target:  5'- -cCACGGGGugGUGGuCCACGgaGg- -3'
miRNA:   3'- cuGUGCCUCugCGCUuGGUGCgaCac -5'
14326 5' -55.5 NC_003521.1 + 201580 0.68 0.91067
Target:  5'- cGGCugGGGcuGAacgccCGCGGGCCAcCGCUGUc -3'
miRNA:   3'- -CUGugCCU--CU-----GCGCUUGGU-GCGACAc -5'
14326 5' -55.5 NC_003521.1 + 236458 0.68 0.91067
Target:  5'- --aGCGG-GACGCGGGCCGCGaUGa- -3'
miRNA:   3'- cugUGCCuCUGCGCUUGGUGCgACac -5'
14326 5' -55.5 NC_003521.1 + 209352 0.68 0.91067
Target:  5'- cGACGCGGuuACGUGAuguACCugGCUu-- -3'
miRNA:   3'- -CUGUGCCucUGCGCU---UGGugCGAcac -5'
14326 5' -55.5 NC_003521.1 + 46390 0.69 0.904728
Target:  5'- gGGCGCGGGGuGCGUGGGgCGCGCgGg- -3'
miRNA:   3'- -CUGUGCCUC-UGCGCUUgGUGCGaCac -5'
14326 5' -55.5 NC_003521.1 + 115475 0.69 0.904121
Target:  5'- aGCGCGGAcgaacaGCGUGGGCCGCGUgucgcucUGUGg -3'
miRNA:   3'- cUGUGCCUc-----UGCGCUUGGUGCG-------ACAC- -5'
14326 5' -55.5 NC_003521.1 + 13990 0.69 0.898564
Target:  5'- cGGCGCGGcggcGGGCGaGGACCccaugGCGCUGUa -3'
miRNA:   3'- -CUGUGCC----UCUGCgCUUGG-----UGCGACAc -5'
14326 5' -55.5 NC_003521.1 + 117528 0.69 0.892181
Target:  5'- gGACGCcGAGucgccCGCGGACCugACGCUGUc -3'
miRNA:   3'- -CUGUGcCUCu----GCGCUUGG--UGCGACAc -5'
14326 5' -55.5 NC_003521.1 + 100696 0.69 0.892181
Target:  5'- uGAUGCGGAGGCGCc-GCCGCggccGCUGaUGg -3'
miRNA:   3'- -CUGUGCCUCUGCGcuUGGUG----CGAC-AC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.