miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14328 3' -58.9 NC_003521.1 + 100704 0.66 0.877326
Target:  5'- aGGcGCCGCCGCGGccgcugAUGGaGGA-GGCg -3'
miRNA:   3'- cCC-CGGUGGCGUCca----UACC-CUUgCCG- -5'
14328 3' -58.9 NC_003521.1 + 118921 0.66 0.877326
Target:  5'- -cGG-CGCCGC-GGcGUGGGcGGCGGCg -3'
miRNA:   3'- ccCCgGUGGCGuCCaUACCC-UUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 38529 0.66 0.877326
Target:  5'- cGGGCCGgCGgAGcucgacagagGUGGGGacACGGCa -3'
miRNA:   3'- cCCCGGUgGCgUCca--------UACCCU--UGCCG- -5'
14328 3' -58.9 NC_003521.1 + 195720 0.66 0.877326
Target:  5'- -cGG-CGCCGCAGGUAgcggcUGGGGugauCGGg -3'
miRNA:   3'- ccCCgGUGGCGUCCAU-----ACCCUu---GCCg -5'
14328 3' -58.9 NC_003521.1 + 91981 0.66 0.877326
Target:  5'- cGGcGGCCGauccggCGCGaacGGagcGGGAGCGGCg -3'
miRNA:   3'- -CC-CCGGUg-----GCGU---CCauaCCCUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 238756 0.66 0.877326
Target:  5'- cGGGCCGgCGgAGcucgacagagGUGGGGacACGGCa -3'
miRNA:   3'- cCCCGGUgGCgUCca--------UACCCU--UGCCG- -5'
14328 3' -58.9 NC_003521.1 + 160508 0.66 0.877326
Target:  5'- ---aCCGCgGCGGGaggaGGGGGCGGCa -3'
miRNA:   3'- ccccGGUGgCGUCCaua-CCCUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 108084 0.66 0.877326
Target:  5'- uGGGGCCGgC-CAGGaUGUagcgcuugGGGAACuugGGCa -3'
miRNA:   3'- -CCCCGGUgGcGUCC-AUA--------CCCUUG---CCG- -5'
14328 3' -58.9 NC_003521.1 + 150298 0.66 0.875286
Target:  5'- cGGGGCCAUCGCGaGUucuaccucuacgacGgacgcucGGGAcACGGCc -3'
miRNA:   3'- -CCCCGGUGGCGUcCA--------------Ua------CCCU-UGCCG- -5'
14328 3' -58.9 NC_003521.1 + 38185 0.67 0.870459
Target:  5'- cGGGGCCGCucccagugcuCGCggucgAGGUcgGGcaggaggcgcaGGGCGGCc -3'
miRNA:   3'- -CCCCGGUG----------GCG-----UCCAuaCC-----------CUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 39440 0.67 0.870459
Target:  5'- aGGcGG-CGCCGUGGcucccGGGGACGGCa -3'
miRNA:   3'- -CC-CCgGUGGCGUCcaua-CCCUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 13203 0.67 0.870459
Target:  5'- cGGGCCGCCGUguuGGa--GGGccGAcCGGCg -3'
miRNA:   3'- cCCCGGUGGCGu--CCauaCCC--UU-GCCG- -5'
14328 3' -58.9 NC_003521.1 + 239667 0.67 0.870459
Target:  5'- aGGcGG-CGCCGUGGcucccGGGGACGGCa -3'
miRNA:   3'- -CC-CCgGUGGCGUCcaua-CCCUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 238413 0.67 0.870459
Target:  5'- cGGGGCCGCucccagugcuCGCggucgAGGUcgGGcaggaggcgcaGGGCGGCc -3'
miRNA:   3'- -CCCCGGUG----------GCG-----UCCAuaCC-----------CUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 168555 0.67 0.870459
Target:  5'- cGGcGCUggcggGCUGCGGGUAaGGuGGCGGCu -3'
miRNA:   3'- cCC-CGG-----UGGCGUCCAUaCCcUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 45636 0.67 0.870459
Target:  5'- -cGGCCACCGCcgccGGcuccgcgGGGucCGGCg -3'
miRNA:   3'- ccCCGGUGGCGu---CCaua----CCCuuGCCG- -5'
14328 3' -58.9 NC_003521.1 + 210411 0.67 0.863402
Target:  5'- uGGGaCCGCaGCGuGGUcggcGUGGGcggcGACGGCa -3'
miRNA:   3'- cCCC-GGUGgCGU-CCA----UACCC----UUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 114740 0.67 0.863402
Target:  5'- -cGGCaCGCCGUGGGgGUGGc-GCGGCc -3'
miRNA:   3'- ccCCG-GUGGCGUCCaUACCcuUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 124109 0.67 0.863402
Target:  5'- cGGGaCCGCCGUGGaaGUGG--ACGGCg -3'
miRNA:   3'- cCCC-GGUGGCGUCcaUACCcuUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 99475 0.67 0.856158
Target:  5'- --cGCCGCCGCAcccGUGGGAACcGCa -3'
miRNA:   3'- cccCGGUGGCGUccaUACCCUUGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.