miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14328 3' -58.9 NC_003521.1 + 155826 0.66 0.896737
Target:  5'- cGGGCCugCGUcaucGGUuaccaGGGcACGGUg -3'
miRNA:   3'- cCCCGGugGCGu---CCAua---CCCuUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 122507 0.66 0.896737
Target:  5'- aGGGCCAaCGCGGcGgc-GGGcaggccGGCGGCg -3'
miRNA:   3'- cCCCGGUgGCGUC-CauaCCC------UUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 128395 0.66 0.896119
Target:  5'- uGGGCCGCCugaGCGGGcGUcGGuccgaaaGGCGGCc -3'
miRNA:   3'- cCCCGGUGG---CGUCCaUAcCC-------UUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 228250 0.66 0.890468
Target:  5'- uGGGuGCCGCCGU-GGUGgucGGuuUGGCc -3'
miRNA:   3'- -CCC-CGGUGGCGuCCAUac-CCuuGCCG- -5'
14328 3' -58.9 NC_003521.1 + 107317 0.66 0.890468
Target:  5'- ---aUCGCCGCGGGU-UGGGccccgcagcAGCGGCg -3'
miRNA:   3'- ccccGGUGGCGUCCAuACCC---------UUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 107706 0.66 0.890468
Target:  5'- --uGCCACUGCuguGGcUGUGGcGAggGCGGCu -3'
miRNA:   3'- cccCGGUGGCGu--CC-AUACC-CU--UGCCG- -5'
14328 3' -58.9 NC_003521.1 + 121107 0.66 0.890468
Target:  5'- cGGGGCCAucCCGCuGaGgcUGGuGGACGcCg -3'
miRNA:   3'- -CCCCGGU--GGCGuC-CauACC-CUUGCcG- -5'
14328 3' -58.9 NC_003521.1 + 123349 0.66 0.890468
Target:  5'- -aGGCCcguCGcCGGGUGUGGaGGagGCGGCg -3'
miRNA:   3'- ccCCGGug-GC-GUCCAUACC-CU--UGCCG- -5'
14328 3' -58.9 NC_003521.1 + 43565 0.66 0.890468
Target:  5'- aGGcGGCCGCUGaCuGG---GGGGACGGg -3'
miRNA:   3'- -CC-CCGGUGGC-GuCCauaCCCUUGCCg -5'
14328 3' -58.9 NC_003521.1 + 115922 0.66 0.890468
Target:  5'- cGGGCC-CCGUgc-UGUGGGAGaagGGCg -3'
miRNA:   3'- cCCCGGuGGCGuccAUACCCUUg--CCG- -5'
14328 3' -58.9 NC_003521.1 + 186758 0.66 0.888548
Target:  5'- uGGGGCUcgGCgGCAucggcggaggcggcGGUgGUGGcGGCGGCg -3'
miRNA:   3'- -CCCCGG--UGgCGU--------------CCA-UACCcUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 13619 0.66 0.883997
Target:  5'- gGGGGCgCGagGCuauaaacuGGgcUGGGAAgGGCg -3'
miRNA:   3'- -CCCCG-GUggCGu-------CCauACCCUUgCCG- -5'
14328 3' -58.9 NC_003521.1 + 76182 0.66 0.883997
Target:  5'- cGGGCCugCGUgAGGcgccacaGGAugGGCc -3'
miRNA:   3'- cCCCGGugGCG-UCCauac---CCUugCCG- -5'
14328 3' -58.9 NC_003521.1 + 223164 0.66 0.883997
Target:  5'- aGGGCCACCGU-GGUGccccGGuGCuGGCg -3'
miRNA:   3'- cCCCGGUGGCGuCCAUac--CCuUG-CCG- -5'
14328 3' -58.9 NC_003521.1 + 123461 0.66 0.883997
Target:  5'- cGGGG--ACCGCGGGU-UGGcGAcUGGCc -3'
miRNA:   3'- -CCCCggUGGCGUCCAuACC-CUuGCCG- -5'
14328 3' -58.9 NC_003521.1 + 164198 0.66 0.883997
Target:  5'- aGGaGGCggaACgGCGGGgcggcgGUGGuAGCGGCg -3'
miRNA:   3'- -CC-CCGg--UGgCGUCCa-----UACCcUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 76535 0.66 0.883997
Target:  5'- -uGGCUGCUGCugcGGUGgcuguccaGGAGCGGCg -3'
miRNA:   3'- ccCCGGUGGCGu--CCAUac------CCUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 128884 0.66 0.883997
Target:  5'- --uGCCGCCGCgccAGGUAgucGaGGGCGGCg -3'
miRNA:   3'- cccCGGUGGCG---UCCAUac-C-CUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 237843 0.66 0.883997
Target:  5'- uGGGGUCGgcagccuuUCGguGGUAccGGGAGagGGCg -3'
miRNA:   3'- -CCCCGGU--------GGCguCCAUa-CCCUUg-CCG- -5'
14328 3' -58.9 NC_003521.1 + 11755 0.66 0.883997
Target:  5'- cGGGCCcgACuCGCcc---UGGGGACGGCu -3'
miRNA:   3'- cCCCGG--UG-GCGuccauACCCUUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.