miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14328 3' -58.9 NC_003521.1 + 33791 0.7 0.682068
Target:  5'- uGGGCUGCCcgcGCAGGUagaGUGacgaGAGCGGCu -3'
miRNA:   3'- cCCCGGUGG---CGUCCA---UACc---CUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 34308 0.66 0.908653
Target:  5'- aGGGGCuCGCgCGUguacAGGgagcguUGGaAGCGGCg -3'
miRNA:   3'- -CCCCG-GUG-GCG----UCCau----ACCcUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 36312 0.66 0.908077
Target:  5'- uGGGGCgCACCcucaguCGGGgcGUGGGGACaugcgacuuuaggGGCu -3'
miRNA:   3'- -CCCCG-GUGGc-----GUCCa-UACCCUUG-------------CCG- -5'
14328 3' -58.9 NC_003521.1 + 36834 0.66 0.902799
Target:  5'- cGGGCCGgCGCugcugugccGGGUagagcaccugacGUGGGc-CGGCa -3'
miRNA:   3'- cCCCGGUgGCG---------UCCA------------UACCCuuGCCG- -5'
14328 3' -58.9 NC_003521.1 + 38185 0.67 0.870459
Target:  5'- cGGGGCCGCucccagugcuCGCggucgAGGUcgGGcaggaggcgcaGGGCGGCc -3'
miRNA:   3'- -CCCCGGUG----------GCG-----UCCAuaCC-----------CUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 38529 0.66 0.877326
Target:  5'- cGGGCCGgCGgAGcucgacagagGUGGGGacACGGCa -3'
miRNA:   3'- cCCCGGUgGCgUCca--------UACCCU--UGCCG- -5'
14328 3' -58.9 NC_003521.1 + 39022 0.7 0.720019
Target:  5'- -cGGCCgucagcagcgACgGCGGGUGUGGcgccgaggcGAACGGCu -3'
miRNA:   3'- ccCCGG----------UGgCGUCCAUACC---------CUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 39440 0.67 0.870459
Target:  5'- aGGcGG-CGCCGUGGcucccGGGGACGGCa -3'
miRNA:   3'- -CC-CCgGUGGCGUCcaua-CCCUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 39858 0.7 0.690675
Target:  5'- uGGGGCUugCaCGuGGUGggguugugcacguUGGGGugGGCg -3'
miRNA:   3'- -CCCCGGugGcGU-CCAU-------------ACCCUugCCG- -5'
14328 3' -58.9 NC_003521.1 + 40329 0.68 0.800711
Target:  5'- -cGGCCuccGCUGCGGGUcccgGGGggUGGg -3'
miRNA:   3'- ccCCGG---UGGCGUCCAua--CCCuuGCCg -5'
14328 3' -58.9 NC_003521.1 + 43472 0.69 0.774769
Target:  5'- cGGGCCAgCGCGGcggccGUGcUGGccGCGGCg -3'
miRNA:   3'- cCCCGGUgGCGUC-----CAU-ACCcuUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 43565 0.66 0.890468
Target:  5'- aGGcGGCCGCUGaCuGG---GGGGACGGg -3'
miRNA:   3'- -CC-CCGGUGGC-GuCCauaCCCUUGCCg -5'
14328 3' -58.9 NC_003521.1 + 45636 0.67 0.870459
Target:  5'- -cGGCCACCGCcgccGGcuccgcgGGGucCGGCg -3'
miRNA:   3'- ccCCGGUGGCGu---CCaua----CCCuuGCCG- -5'
14328 3' -58.9 NC_003521.1 + 45722 0.67 0.848733
Target:  5'- cGGGGCguCUGCGGGacgcGGGucaGGCc -3'
miRNA:   3'- -CCCCGguGGCGUCCaua-CCCuugCCG- -5'
14328 3' -58.9 NC_003521.1 + 46165 0.68 0.825428
Target:  5'- -uGGCCAUcugCGUGGGaGUGGuGAugGGCu -3'
miRNA:   3'- ccCCGGUG---GCGUCCaUACC-CUugCCG- -5'
14328 3' -58.9 NC_003521.1 + 46746 0.66 0.906919
Target:  5'- aGGGCCcccagcaGCUGguGGUAgcagcugauacgGGGcACGGUg -3'
miRNA:   3'- cCCCGG-------UGGCguCCAUa-----------CCCuUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 50818 0.69 0.747802
Target:  5'- cGGuGUCcCCGguGGU--GGGAGCGGUg -3'
miRNA:   3'- cCC-CGGuGGCguCCAuaCCCUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 52222 0.74 0.474027
Target:  5'- gGGGGCCgguaggGCgGCGGGcuacaguUGGGcAGCGGCa -3'
miRNA:   3'- -CCCCGG------UGgCGUCCau-----ACCC-UUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 53369 0.67 0.851724
Target:  5'- aGGGGCCgacagaccgaGCaggaGCAGGccgcggcgagcaGGGGAUGGCg -3'
miRNA:   3'- -CCCCGG----------UGg---CGUCCaua---------CCCUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 57641 0.67 0.856158
Target:  5'- gGGGGCCGaaaCGGGac--GGGACGGCg -3'
miRNA:   3'- -CCCCGGUggcGUCCauacCCUUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.