Results 21 - 40 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14328 | 3' | -58.9 | NC_003521.1 | + | 17477 | 0.73 | 0.519438 |
Target: 5'- -aGGCCGCCGCcgAGGccUGGGGcaccuaucuGCGGCa -3' miRNA: 3'- ccCCGGUGGCG--UCCauACCCU---------UGCCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 177792 | 0.73 | 0.537147 |
Target: 5'- cGGGGCCuguCCGCuGGUgggcgucGUGGGcgccgcCGGCu -3' miRNA: 3'- -CCCCGGu--GGCGuCCA-------UACCCuu----GCCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 87242 | 0.73 | 0.538085 |
Target: 5'- --uGCUGCUGCAGGUGguGGAGCGGCu -3' miRNA: 3'- cccCGGUGGCGUCCAUacCCUUGCCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 216892 | 0.73 | 0.538085 |
Target: 5'- aGGGUCGUCGCAGGUGaggaGGGcGCGGUg -3' miRNA: 3'- cCCCGGUGGCGUCCAUa---CCCuUGCCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 13402 | 0.73 | 0.547496 |
Target: 5'- cGGGcGUCGuuGUGGGggugucagAUGGGAACGGUc -3' miRNA: 3'- -CCC-CGGUggCGUCCa-------UACCCUUGCCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 105692 | 0.72 | 0.575058 |
Target: 5'- uGGGGuggcugcCCACCaGCAGGUA-GGcGAAgCGGCg -3' miRNA: 3'- -CCCC-------GGUGG-CGUCCAUaCC-CUU-GCCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 197296 | 0.72 | 0.585599 |
Target: 5'- aGGGCgGCuCGaCGGGagaGGGGGCGGCa -3' miRNA: 3'- cCCCGgUG-GC-GUCCauaCCCUUGCCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 150542 | 0.72 | 0.585599 |
Target: 5'- uGGGGuCCGgCGguGGUGgugcGGGugguGGCGGCg -3' miRNA: 3'- -CCCC-GGUgGCguCCAUa---CCC----UUGCCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 197837 | 0.72 | 0.595213 |
Target: 5'- -cGGCCGuCUGCAGGUcgucgGUGGGcgcCGGCg -3' miRNA: 3'- ccCCGGU-GGCGUCCA-----UACCCuu-GCCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 98475 | 0.72 | 0.595213 |
Target: 5'- cGGcGGCCGCgGCGGccGUGGcGGCGGCc -3' miRNA: 3'- -CC-CCGGUGgCGUCcaUACCcUUGCCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 174216 | 0.72 | 0.604853 |
Target: 5'- uGGGGUCG-CGCGGGUcgGGcAGgGGCg -3' miRNA: 3'- -CCCCGGUgGCGUCCAuaCCcUUgCCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 22354 | 0.71 | 0.614509 |
Target: 5'- cGGGGCCACUGCGcccacGGcGUGGugcCGGCc -3' miRNA: 3'- -CCCCGGUGGCGU-----CCaUACCcuuGCCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 91093 | 0.71 | 0.614509 |
Target: 5'- aGGGGCCcguCUGCGccugcgccGGUcgGGGAuucccCGGCa -3' miRNA: 3'- -CCCCGGu--GGCGU--------CCAuaCCCUu----GCCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 198298 | 0.71 | 0.624178 |
Target: 5'- cGGGGUgACUggaguucccuGgGGGUggGGGAugGGCg -3' miRNA: 3'- -CCCCGgUGG----------CgUCCAuaCCCUugCCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 91329 | 0.71 | 0.624178 |
Target: 5'- cGGGGgCACgCGCAggcgaggugcuGGUcgGGaGGACGGUg -3' miRNA: 3'- -CCCCgGUG-GCGU-----------CCAuaCC-CUUGCCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 177980 | 0.71 | 0.632885 |
Target: 5'- cGGGGCaCACCuggggcgguGCGGGUA-GGGcggguaggacggaGGCGGCc -3' miRNA: 3'- -CCCCG-GUGG---------CGUCCAUaCCC-------------UUGCCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 151107 | 0.71 | 0.632885 |
Target: 5'- cGGGCCGCUGgGGGauggcggggggaaUAUGGGGACuaGGUu -3' miRNA: 3'- cCCCGGUGGCgUCC-------------AUACCCUUG--CCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 170872 | 0.71 | 0.653191 |
Target: 5'- gGGGGCgGgCGCGGGUGgucaGGcGucCGGCg -3' miRNA: 3'- -CCCCGgUgGCGUCCAUa---CC-CuuGCCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 31702 | 0.71 | 0.653191 |
Target: 5'- uGGGGCgGCgGCAGcaugugcgcGUGcUGGGAcgccGCGGCc -3' miRNA: 3'- -CCCCGgUGgCGUC---------CAU-ACCCU----UGCCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 128803 | 0.71 | 0.658018 |
Target: 5'- cGGGG-CACCGCAGaacguuuucccgGUGGGGcucguagACGGCg -3' miRNA: 3'- -CCCCgGUGGCGUCca----------UACCCU-------UGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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