Results 21 - 40 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14328 | 3' | -58.9 | NC_003521.1 | + | 128884 | 0.66 | 0.883997 |
Target: 5'- --uGCCGCCGCgccAGGUAgucGaGGGCGGCg -3' miRNA: 3'- cccCGGUGGCG---UCCAUac-C-CUUGCCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 128620 | 0.66 | 0.908653 |
Target: 5'- cGGGGCUgagcacgaaguuGCCGUAGGU--GGc--CGGCg -3' miRNA: 3'- -CCCCGG------------UGGCGUCCAuaCCcuuGCCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 119810 | 0.66 | 0.908653 |
Target: 5'- cGGGGCgACaCGguGGUgcgcacgccccaGUGGuaGGCGGUg -3' miRNA: 3'- -CCCCGgUG-GCguCCA------------UACCc-UUGCCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 128395 | 0.66 | 0.896119 |
Target: 5'- uGGGCCGCCugaGCGGGcGUcGGuccgaaaGGCGGCc -3' miRNA: 3'- cCCCGGUGG---CGUCCaUAcCC-------UUGCCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 126580 | 0.66 | 0.908653 |
Target: 5'- cGGGaaGCCgccgucguGCCGguGGUAgugcGGGAAguCGGUg -3' miRNA: 3'- -CCC--CGG--------UGGCguCCAUa---CCCUU--GCCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 201928 | 0.66 | 0.902799 |
Target: 5'- cGGGGaCGCCGCAGGaaaacccgagcgUGUcggcugauaccGGGAACGauGCc -3' miRNA: 3'- -CCCCgGUGGCGUCC------------AUA-----------CCCUUGC--CG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 121107 | 0.66 | 0.890468 |
Target: 5'- cGGGGCCAucCCGCuGaGgcUGGuGGACGcCg -3' miRNA: 3'- -CCCCGGU--GGCGuC-CauACC-CUUGCcG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 36834 | 0.66 | 0.902799 |
Target: 5'- cGGGCCGgCGCugcugugccGGGUagagcaccugacGUGGGc-CGGCa -3' miRNA: 3'- cCCCGGUgGCG---------UCCA------------UACCCuuGCCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 34308 | 0.66 | 0.908653 |
Target: 5'- aGGGGCuCGCgCGUguacAGGgagcguUGGaAGCGGCg -3' miRNA: 3'- -CCCCG-GUG-GCG----UCCau----ACCcUUGCCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 123349 | 0.66 | 0.890468 |
Target: 5'- -aGGCCcguCGcCGGGUGUGGaGGagGCGGCg -3' miRNA: 3'- ccCCGGug-GC-GUCCAUACC-CU--UGCCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 155826 | 0.66 | 0.896737 |
Target: 5'- cGGGCCugCGUcaucGGUuaccaGGGcACGGUg -3' miRNA: 3'- cCCCGGugGCGu---CCAua---CCCuUGCCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 115922 | 0.66 | 0.890468 |
Target: 5'- cGGGCC-CCGUgc-UGUGGGAGaagGGCg -3' miRNA: 3'- cCCCGGuGGCGuccAUACCCUUg--CCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 209558 | 0.66 | 0.908653 |
Target: 5'- cGGGGUgGCgGCGacGGUGgcgGGGGuccgGgGGCg -3' miRNA: 3'- -CCCCGgUGgCGU--CCAUa--CCCU----UgCCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 70367 | 0.66 | 0.908653 |
Target: 5'- cGGGGUagaGCCGCAGGcggcgGUaGaGGuAGCGGg -3' miRNA: 3'- -CCCCGg--UGGCGUCCa----UA-C-CC-UUGCCg -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 213045 | 0.66 | 0.901002 |
Target: 5'- cGGGCCGgaGUAGGUuUcuuccuccgcgcucGGcGGACGGCa -3' miRNA: 3'- cCCCGGUggCGUCCAuA--------------CC-CUUGCCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 123461 | 0.66 | 0.883997 |
Target: 5'- cGGGG--ACCGCGGGU-UGGcGAcUGGCc -3' miRNA: 3'- -CCCCggUGGCGUCCAuACC-CUuGCCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 70189 | 0.66 | 0.902799 |
Target: 5'- cGGuGGUaCACCgGCAGGUcgGGu--CGGCc -3' miRNA: 3'- -CC-CCG-GUGG-CGUCCAuaCCcuuGCCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 46746 | 0.66 | 0.906919 |
Target: 5'- aGGGCCcccagcaGCUGguGGUAgcagcugauacgGGGcACGGUg -3' miRNA: 3'- cCCCGG-------UGGCguCCAUa-----------CCCuUGCCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 186758 | 0.66 | 0.888548 |
Target: 5'- uGGGGCUcgGCgGCAucggcggaggcggcGGUgGUGGcGGCGGCg -3' miRNA: 3'- -CCCCGG--UGgCGU--------------CCA-UACCcUUGCCG- -5' |
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14328 | 3' | -58.9 | NC_003521.1 | + | 38529 | 0.66 | 0.877326 |
Target: 5'- cGGGCCGgCGgAGcucgacagagGUGGGGacACGGCa -3' miRNA: 3'- cCCCGGUgGCgUCca--------UACCCU--UGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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