miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14328 3' -58.9 NC_003521.1 + 119810 0.66 0.908653
Target:  5'- cGGGGCgACaCGguGGUgcgcacgccccaGUGGuaGGCGGUg -3'
miRNA:   3'- -CCCCGgUG-GCguCCA------------UACCc-UUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 123596 0.66 0.908653
Target:  5'- cGGGaGCCGCCGCggccgucagcGGGUgcgacAUcuccaccgccucGGGcGGCGGCa -3'
miRNA:   3'- -CCC-CGGUGGCG----------UCCA-----UA------------CCC-UUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 108084 0.66 0.877326
Target:  5'- uGGGGCCGgC-CAGGaUGUagcgcuugGGGAACuugGGCa -3'
miRNA:   3'- -CCCCGGUgGcGUCC-AUA--------CCCUUG---CCG- -5'
14328 3' -58.9 NC_003521.1 + 36834 0.66 0.902799
Target:  5'- cGGGCCGgCGCugcugugccGGGUagagcaccugacGUGGGc-CGGCa -3'
miRNA:   3'- cCCCGGUgGCG---------UCCA------------UACCCuuGCCG- -5'
14328 3' -58.9 NC_003521.1 + 223164 0.66 0.883997
Target:  5'- aGGGCCACCGU-GGUGccccGGuGCuGGCg -3'
miRNA:   3'- cCCCGGUGGCGuCCAUac--CCuUG-CCG- -5'
14328 3' -58.9 NC_003521.1 + 34308 0.66 0.908653
Target:  5'- aGGGGCuCGCgCGUguacAGGgagcguUGGaAGCGGCg -3'
miRNA:   3'- -CCCCG-GUG-GCG----UCCau----ACCcUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 238756 0.66 0.877326
Target:  5'- cGGGCCGgCGgAGcucgacagagGUGGGGacACGGCa -3'
miRNA:   3'- cCCCGGUgGCgUCca--------UACCCU--UGCCG- -5'
14328 3' -58.9 NC_003521.1 + 213045 0.66 0.901002
Target:  5'- cGGGCCGgaGUAGGUuUcuuccuccgcgcucGGcGGACGGCa -3'
miRNA:   3'- cCCCGGUggCGUCCAuA--------------CC-CUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 150298 0.66 0.875286
Target:  5'- cGGGGCCAUCGCGaGUucuaccucuacgacGgacgcucGGGAcACGGCc -3'
miRNA:   3'- -CCCCGGUGGCGUcCA--------------Ua------CCCU-UGCCG- -5'
14328 3' -58.9 NC_003521.1 + 92074 0.66 0.896737
Target:  5'- -uGGCgGaCCGgGGGUcgGGGggUGcGCa -3'
miRNA:   3'- ccCCGgU-GGCgUCCAuaCCCuuGC-CG- -5'
14328 3' -58.9 NC_003521.1 + 237843 0.66 0.883997
Target:  5'- uGGGGUCGgcagccuuUCGguGGUAccGGGAGagGGCg -3'
miRNA:   3'- -CCCCGGU--------GGCguCCAUa-CCCUUg-CCG- -5'
14328 3' -58.9 NC_003521.1 + 155826 0.66 0.896737
Target:  5'- cGGGCCugCGUcaucGGUuaccaGGGcACGGUg -3'
miRNA:   3'- cCCCGGugGCGu---CCAua---CCCuUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 76182 0.66 0.883997
Target:  5'- cGGGCCugCGUgAGGcgccacaGGAugGGCc -3'
miRNA:   3'- cCCCGGugGCG-UCCauac---CCUugCCG- -5'
14328 3' -58.9 NC_003521.1 + 100704 0.66 0.877326
Target:  5'- aGGcGCCGCCGCGGccgcugAUGGaGGA-GGCg -3'
miRNA:   3'- cCC-CGGUGGCGUCca----UACC-CUUgCCG- -5'
14328 3' -58.9 NC_003521.1 + 118921 0.66 0.877326
Target:  5'- -cGG-CGCCGC-GGcGUGGGcGGCGGCg -3'
miRNA:   3'- ccCCgGUGGCGuCCaUACCC-UUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 70189 0.66 0.902799
Target:  5'- cGGuGGUaCACCgGCAGGUcgGGu--CGGCc -3'
miRNA:   3'- -CC-CCG-GUGG-CGUCCAuaCCcuuGCCG- -5'
14328 3' -58.9 NC_003521.1 + 70367 0.66 0.908653
Target:  5'- cGGGGUagaGCCGCAGGcggcgGUaGaGGuAGCGGg -3'
miRNA:   3'- -CCCCGg--UGGCGUCCa----UA-C-CC-UUGCCg -5'
14328 3' -58.9 NC_003521.1 + 160508 0.66 0.877326
Target:  5'- ---aCCGCgGCGGGaggaGGGGGCGGCa -3'
miRNA:   3'- ccccGGUGgCGUCCaua-CCCUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 91981 0.66 0.877326
Target:  5'- cGGcGGCCGauccggCGCGaacGGagcGGGAGCGGCg -3'
miRNA:   3'- -CC-CCGGUg-----GCGU---CCauaCCCUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 46746 0.66 0.906919
Target:  5'- aGGGCCcccagcaGCUGguGGUAgcagcugauacgGGGcACGGUg -3'
miRNA:   3'- cCCCGG-------UGGCguCCAUa-----------CCCuUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.