miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14328 3' -58.9 NC_003521.1 + 7 0.68 0.800711
Target:  5'- -cGGCCuccGCUGCGGGUcccgGGGggUGGg -3'
miRNA:   3'- ccCCGG---UGGCGUCCAua--CCCuuGCCg -5'
14328 3' -58.9 NC_003521.1 + 1701 0.66 0.902799
Target:  5'- cGGGGaCGCCGCAGGaaaacccgagcgUGUcggcugauaccGGGAACGauGCc -3'
miRNA:   3'- -CCCCgGUGGCGUCC------------AUA-----------CCCUUGC--CG- -5'
14328 3' -58.9 NC_003521.1 + 1863 0.69 0.737699
Target:  5'- cGGGGCCcggcgccucuaauACCGCagcuggcgcAGGUAccGGGACGGg -3'
miRNA:   3'- -CCCCGG-------------UGGCG---------UCCAUacCCUUGCCg -5'
14328 3' -58.9 NC_003521.1 + 5280 0.67 0.855424
Target:  5'- aGGGGCCugacgugcucgaaACCcgGCAuGUuucgcGGGGGCGGCg -3'
miRNA:   3'- -CCCCGG-------------UGG--CGUcCAua---CCCUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 6436 0.7 0.701147
Target:  5'- gGGGGCCGCUGCGacaacagcacGGga--GGAGCGGa -3'
miRNA:   3'- -CCCCGGUGGCGU----------CCauacCCUUGCCg -5'
14328 3' -58.9 NC_003521.1 + 11755 0.66 0.883997
Target:  5'- cGGGCCcgACuCGCcc---UGGGGACGGCu -3'
miRNA:   3'- cCCCGG--UG-GCGuccauACCCUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 12876 0.74 0.474027
Target:  5'- cGGGCCuucCCGCAGGUAcaccaUGuGGuACGGUa -3'
miRNA:   3'- cCCCGGu--GGCGUCCAU-----AC-CCuUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 13203 0.67 0.870459
Target:  5'- cGGGCCGCCGUguuGGa--GGGccGAcCGGCg -3'
miRNA:   3'- cCCCGGUGGCGu--CCauaCCC--UU-GCCG- -5'
14328 3' -58.9 NC_003521.1 + 13402 0.73 0.547496
Target:  5'- cGGGcGUCGuuGUGGGggugucagAUGGGAACGGUc -3'
miRNA:   3'- -CCC-CGGUggCGUCCa-------UACCCUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 13619 0.66 0.883997
Target:  5'- gGGGGCgCGagGCuauaaacuGGgcUGGGAAgGGCg -3'
miRNA:   3'- -CCCCG-GUggCGu-------CCauACCCUUgCCG- -5'
14328 3' -58.9 NC_003521.1 + 17175 0.68 0.809096
Target:  5'- cGGGGCCGaacaauuaaaCGCAcGUcgGGGcuAUGGCg -3'
miRNA:   3'- -CCCCGGUg---------GCGUcCAuaCCCu-UGCCG- -5'
14328 3' -58.9 NC_003521.1 + 17477 0.73 0.519438
Target:  5'- -aGGCCGCCGCcgAGGccUGGGGcaccuaucuGCGGCa -3'
miRNA:   3'- ccCCGGUGGCG--UCCauACCCU---------UGCCG- -5'
14328 3' -58.9 NC_003521.1 + 22354 0.71 0.614509
Target:  5'- cGGGGCCACUGCGcccacGGcGUGGugcCGGCc -3'
miRNA:   3'- -CCCCGGUGGCGU-----CCaUACCcuuGCCG- -5'
14328 3' -58.9 NC_003521.1 + 22982 0.67 0.856158
Target:  5'- uGGGGCuCugCGCcuGGUugacGGuGAuaGCGGCa -3'
miRNA:   3'- -CCCCG-GugGCGu-CCAua--CC-CU--UGCCG- -5'
14328 3' -58.9 NC_003521.1 + 26795 1.13 0.001438
Target:  5'- gGGGGCCACCGCAGGUAUGGGAACGGCg -3'
miRNA:   3'- -CCCCGGUGGCGUCCAUACCCUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 28470 0.68 0.825428
Target:  5'- uGGGCggugCACCaGCGGGU--GGuGAugGGCg -3'
miRNA:   3'- cCCCG----GUGG-CGUCCAuaCC-CUugCCG- -5'
14328 3' -58.9 NC_003521.1 + 29966 0.69 0.765884
Target:  5'- uGGGCCcuacGCCGguGGUcuggacggaggGaGGGGACGaGCg -3'
miRNA:   3'- cCCCGG----UGGCguCCA-----------UaCCCUUGC-CG- -5'
14328 3' -58.9 NC_003521.1 + 31625 0.74 0.465182
Target:  5'- aGGGCCACCGCGGccgacgGUGGGGucaucuggaGGCu -3'
miRNA:   3'- cCCCGGUGGCGUCca----UACCCUug-------CCG- -5'
14328 3' -58.9 NC_003521.1 + 31702 0.71 0.653191
Target:  5'- uGGGGCgGCgGCAGcaugugcgcGUGcUGGGAcgccGCGGCc -3'
miRNA:   3'- -CCCCGgUGgCGUC---------CAU-ACCCU----UGCCG- -5'
14328 3' -58.9 NC_003521.1 + 32703 0.67 0.848733
Target:  5'- cGGGGCUAauauaGCuaGGGUggGGGGuUGGCg -3'
miRNA:   3'- -CCCCGGUgg---CG--UCCAuaCCCUuGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.