miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14328 3' -58.9 NC_003521.1 + 240556 0.68 0.800711
Target:  5'- -cGGCCuccGCUGCGGGUcccgGGGggUGGg -3'
miRNA:   3'- ccCCGG---UGGCGUCCAua--CCCuuGCCg -5'
14328 3' -58.9 NC_003521.1 + 240085 0.7 0.690675
Target:  5'- uGGGGCUugCaCGuGGUGggguugugcacguUGGGGugGGCg -3'
miRNA:   3'- -CCCCGGugGcGU-CCAU-------------ACCCUugCCG- -5'
14328 3' -58.9 NC_003521.1 + 239667 0.67 0.870459
Target:  5'- aGGcGG-CGCCGUGGcucccGGGGACGGCa -3'
miRNA:   3'- -CC-CCgGUGGCGUCcaua-CCCUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 239250 0.7 0.720019
Target:  5'- -cGGCCgucagcagcgACgGCGGGUGUGGcgccgaggcGAACGGCu -3'
miRNA:   3'- ccCCGG----------UGgCGUCCAUACC---------CUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 238756 0.66 0.877326
Target:  5'- cGGGCCGgCGgAGcucgacagagGUGGGGacACGGCa -3'
miRNA:   3'- cCCCGGUgGCgUCca--------UACCCU--UGCCG- -5'
14328 3' -58.9 NC_003521.1 + 238413 0.67 0.870459
Target:  5'- cGGGGCCGCucccagugcuCGCggucgAGGUcgGGcaggaggcgcaGGGCGGCc -3'
miRNA:   3'- -CCCCGGUG----------GCG-----UCCAuaCC-----------CUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 237843 0.66 0.883997
Target:  5'- uGGGGUCGgcagccuuUCGguGGUAccGGGAGagGGCg -3'
miRNA:   3'- -CCCCGGU--------GGCguCCAUa-CCCUUg-CCG- -5'
14328 3' -58.9 NC_003521.1 + 235618 0.67 0.840363
Target:  5'- cGGaGCCcgACCGCGuGGUGuuucaguUGGGAGgGGUg -3'
miRNA:   3'- cCC-CGG--UGGCGU-CCAU-------ACCCUUgCCG- -5'
14328 3' -58.9 NC_003521.1 + 232566 0.69 0.765884
Target:  5'- gGGGGCUGCUGUGuGGUGagcgGGGGGCGacauGCg -3'
miRNA:   3'- -CCCCGGUGGCGU-CCAUa---CCCUUGC----CG- -5'
14328 3' -58.9 NC_003521.1 + 232205 0.78 0.276949
Target:  5'- uGGGCCcCCGCGGGUgGUGGuGGcuguGCGGCg -3'
miRNA:   3'- cCCCGGuGGCGUCCA-UACC-CU----UGCCG- -5'
14328 3' -58.9 NC_003521.1 + 228695 0.66 0.908653
Target:  5'- -aGGCCGCCGCAcccgaaGGAgcGCGGCg -3'
miRNA:   3'- ccCCGGUGGCGUccauacCCU--UGCCG- -5'
14328 3' -58.9 NC_003521.1 + 228250 0.66 0.890468
Target:  5'- uGGGuGCCGCCGU-GGUGgucGGuuUGGCc -3'
miRNA:   3'- -CCC-CGGUGGCGuCCAUac-CCuuGCCG- -5'
14328 3' -58.9 NC_003521.1 + 226469 0.69 0.738622
Target:  5'- uGGGCCACCagcacCAGGUAcUGGucGCGGg -3'
miRNA:   3'- cCCCGGUGGc----GUCCAU-ACCcuUGCCg -5'
14328 3' -58.9 NC_003521.1 + 226350 0.77 0.315935
Target:  5'- --cGCC-CCGCGGGUAgcgccgcGGGAGCGGCg -3'
miRNA:   3'- cccCGGuGGCGUCCAUa------CCCUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 223466 0.76 0.392952
Target:  5'- uGGGCCGCCGCGccggcgucacggcccGGgagGUGGGGcggauCGGCg -3'
miRNA:   3'- cCCCGGUGGCGU---------------CCa--UACCCUu----GCCG- -5'
14328 3' -58.9 NC_003521.1 + 223164 0.66 0.883997
Target:  5'- aGGGCCACCGU-GGUGccccGGuGCuGGCg -3'
miRNA:   3'- cCCCGGUGGCGuCCAUac--CCuUG-CCG- -5'
14328 3' -58.9 NC_003521.1 + 222763 0.69 0.756892
Target:  5'- -cGGCCACgGCGucgGUGGGGuCGGCg -3'
miRNA:   3'- ccCCGGUGgCGUccaUACCCUuGCCG- -5'
14328 3' -58.9 NC_003521.1 + 217625 0.68 0.809096
Target:  5'- -cGGCCGCCaucuccucgGCGuGGUcgGGGGGCauGGCg -3'
miRNA:   3'- ccCCGGUGG---------CGU-CCAuaCCCUUG--CCG- -5'
14328 3' -58.9 NC_003521.1 + 216892 0.73 0.538085
Target:  5'- aGGGUCGUCGCAGGUGaggaGGGcGCGGUg -3'
miRNA:   3'- cCCCGGUGGCGUCCAUa---CCCuUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 216347 0.69 0.756892
Target:  5'- cGGuGGCCACCGaGGGUGUGaGGcccgUGGUc -3'
miRNA:   3'- -CC-CCGGUGGCgUCCAUAC-CCuu--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.