miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14328 3' -58.9 NC_003521.1 + 193300 0.7 0.672469
Target:  5'- cGGaGUCGgCGCGGGggugGUGGGcACGGUg -3'
miRNA:   3'- cCC-CGGUgGCGUCCa---UACCCuUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 60690 0.73 0.51021
Target:  5'- -cGGCCG-CGCGGGggacccGGGGGCGGCg -3'
miRNA:   3'- ccCCGGUgGCGUCCaua---CCCUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 81993 0.73 0.519438
Target:  5'- aGGuGCUGCCGCGGGUGUGGuacugcuccuuGACGGUg -3'
miRNA:   3'- cCC-CGGUGGCGUCCAUACCc----------UUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 105692 0.72 0.575058
Target:  5'- uGGGGuggcugcCCACCaGCAGGUA-GGcGAAgCGGCg -3'
miRNA:   3'- -CCCC-------GGUGG-CGUCCAUaCC-CUU-GCCG- -5'
14328 3' -58.9 NC_003521.1 + 150542 0.72 0.585599
Target:  5'- uGGGGuCCGgCGguGGUGgugcGGGugguGGCGGCg -3'
miRNA:   3'- -CCCC-GGUgGCguCCAUa---CCC----UUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 91093 0.71 0.614509
Target:  5'- aGGGGCCcguCUGCGccugcgccGGUcgGGGAuucccCGGCa -3'
miRNA:   3'- -CCCCGGu--GGCGU--------CCAuaCCCUu----GCCG- -5'
14328 3' -58.9 NC_003521.1 + 91329 0.71 0.624178
Target:  5'- cGGGGgCACgCGCAggcgaggugcuGGUcgGGaGGACGGUg -3'
miRNA:   3'- -CCCCgGUG-GCGU-----------CCAuaCC-CUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 198298 0.71 0.624178
Target:  5'- cGGGGUgACUggaguucccuGgGGGUggGGGAugGGCg -3'
miRNA:   3'- -CCCCGgUGG----------CgUCCAuaCCCUugCCG- -5'
14328 3' -58.9 NC_003521.1 + 31702 0.71 0.653191
Target:  5'- uGGGGCgGCgGCAGcaugugcgcGUGcUGGGAcgccGCGGCc -3'
miRNA:   3'- -CCCCGgUGgCGUC---------CAU-ACCCU----UGCCG- -5'
14328 3' -58.9 NC_003521.1 + 88661 0.74 0.491965
Target:  5'- aGGGCCGCC--AGGUcgGUGGGccGGCGGCc -3'
miRNA:   3'- cCCCGGUGGcgUCCA--UACCC--UUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 151614 0.74 0.482956
Target:  5'- aGGGCC-CgGCAGGU-UGGGGAaguUGGCg -3'
miRNA:   3'- cCCCGGuGgCGUCCAuACCCUU---GCCG- -5'
14328 3' -58.9 NC_003521.1 + 52222 0.74 0.474027
Target:  5'- gGGGGCCgguaggGCgGCGGGcuacaguUGGGcAGCGGCa -3'
miRNA:   3'- -CCCCGG------UGgCGUCCau-----ACCC-UUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 120871 0.79 0.273269
Target:  5'- aGGcGGCCGCgcgucaucacgcccgUGCAGGUGgucGGGGGCGGCu -3'
miRNA:   3'- -CC-CCGGUG---------------GCGUCCAUa--CCCUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 232205 0.78 0.276949
Target:  5'- uGGGCCcCCGCGGGUgGUGGuGGcuguGCGGCg -3'
miRNA:   3'- cCCCGGuGGCGUCCA-UACC-CU----UGCCG- -5'
14328 3' -58.9 NC_003521.1 + 226350 0.77 0.315935
Target:  5'- --cGCC-CCGCGGGUAgcgccgcGGGAGCGGCg -3'
miRNA:   3'- cccCGGuGGCGUCCAUa------CCCUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 223466 0.76 0.392952
Target:  5'- uGGGCCGCCGCGccggcgucacggcccGGgagGUGGGGcggauCGGCg -3'
miRNA:   3'- cCCCGGUGGCGU---------------CCa--UACCCUu----GCCG- -5'
14328 3' -58.9 NC_003521.1 + 71284 0.76 0.395347
Target:  5'- gGGGGCCGCgGCAcGGgccccUGGGGcaccagcaccugggGCGGCg -3'
miRNA:   3'- -CCCCGGUGgCGU-CCau---ACCCU--------------UGCCG- -5'
14328 3' -58.9 NC_003521.1 + 113583 0.75 0.422308
Target:  5'- uGGGGCUggGCCuCGGGggcaacGGGGGCGGCg -3'
miRNA:   3'- -CCCCGG--UGGcGUCCaua---CCCUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 83729 0.75 0.444312
Target:  5'- aGGGCCucgugcuccuccucACCGCGGGgggccUGGGAcagggugGCGGCg -3'
miRNA:   3'- cCCCGG--------------UGGCGUCCau---ACCCU-------UGCCG- -5'
14328 3' -58.9 NC_003521.1 + 113094 0.74 0.465182
Target:  5'- -cGGCCGCCGU-GGUGcaGGAGCGGCu -3'
miRNA:   3'- ccCCGGUGGCGuCCAUacCCUUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.