miRNA display CGI


Results 1 - 20 of 189 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14328 3' -58.9 NC_003521.1 + 186921 0.81 0.187281
Target:  5'- gGGGGgCGCCGguGGc--GGGGGCGGCg -3'
miRNA:   3'- -CCCCgGUGGCguCCauaCCCUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 177980 0.71 0.632885
Target:  5'- cGGGGCaCACCuggggcgguGCGGGUA-GGGcggguaggacggaGGCGGCc -3'
miRNA:   3'- -CCCCG-GUGG---------CGUCCAUaCCC-------------UUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 128803 0.71 0.658018
Target:  5'- cGGGG-CACCGCAGaacguuuucccgGUGGGGcucguagACGGCg -3'
miRNA:   3'- -CCCCgGUGGCGUCca----------UACCCU-------UGCCG- -5'
14328 3' -58.9 NC_003521.1 + 123596 0.66 0.908653
Target:  5'- cGGGaGCCGCCGCggccgucagcGGGUgcgacAUcuccaccgccucGGGcGGCGGCa -3'
miRNA:   3'- -CCC-CGGUGGCG----------UCCA-----UA------------CCC-UUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 31625 0.74 0.465182
Target:  5'- aGGGCCACCGCGGccgacgGUGGGGucaucuggaGGCu -3'
miRNA:   3'- cCCCGGUGGCGUCca----UACCCUug-------CCG- -5'
14328 3' -58.9 NC_003521.1 + 12876 0.74 0.474027
Target:  5'- cGGGCCuucCCGCAGGUAcaccaUGuGGuACGGUa -3'
miRNA:   3'- cCCCGGu--GGCGUCCAU-----AC-CCuUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 177792 0.73 0.537147
Target:  5'- cGGGGCCuguCCGCuGGUgggcgucGUGGGcgccgcCGGCu -3'
miRNA:   3'- -CCCCGGu--GGCGuCCA-------UACCCuu----GCCG- -5'
14328 3' -58.9 NC_003521.1 + 87242 0.73 0.538085
Target:  5'- --uGCUGCUGCAGGUGguGGAGCGGCu -3'
miRNA:   3'- cccCGGUGGCGUCCAUacCCUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 197296 0.72 0.585599
Target:  5'- aGGGCgGCuCGaCGGGagaGGGGGCGGCa -3'
miRNA:   3'- cCCCGgUG-GC-GUCCauaCCCUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 151107 0.71 0.632885
Target:  5'- cGGGCCGCUGgGGGauggcggggggaaUAUGGGGACuaGGUu -3'
miRNA:   3'- cCCCGGUGGCgUCC-------------AUACCCUUG--CCG- -5'
14328 3' -58.9 NC_003521.1 + 197837 0.72 0.595213
Target:  5'- -cGGCCGuCUGCAGGUcgucgGUGGGcgcCGGCg -3'
miRNA:   3'- ccCCGGU-GGCGUCCA-----UACCCuu-GCCG- -5'
14328 3' -58.9 NC_003521.1 + 13402 0.73 0.547496
Target:  5'- cGGGcGUCGuuGUGGGggugucagAUGGGAACGGUc -3'
miRNA:   3'- -CCC-CGGUggCGUCCa-------UACCCUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 149032 0.76 0.373361
Target:  5'- gGGGGugcccaaCCGCCGCccGGGUGUGGGGggauGCGGg -3'
miRNA:   3'- -CCCC-------GGUGGCG--UCCAUACCCU----UGCCg -5'
14328 3' -58.9 NC_003521.1 + 174216 0.72 0.604853
Target:  5'- uGGGGUCG-CGCGGGUcgGGcAGgGGCg -3'
miRNA:   3'- -CCCCGGUgGCGUCCAuaCCcUUgCCG- -5'
14328 3' -58.9 NC_003521.1 + 196742 0.75 0.422308
Target:  5'- uGGGCCAccggcuugacCCGCAGGUA-GGGGuuGCGGa -3'
miRNA:   3'- cCCCGGU----------GGCGUCCAUaCCCU--UGCCg -5'
14328 3' -58.9 NC_003521.1 + 216892 0.73 0.538085
Target:  5'- aGGGUCGUCGCAGGUGaggaGGGcGCGGUg -3'
miRNA:   3'- cCCCGGUGGCGUCCAUa---CCCuUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 22354 0.71 0.614509
Target:  5'- cGGGGCCACUGCGcccacGGcGUGGugcCGGCc -3'
miRNA:   3'- -CCCCGGUGGCGU-----CCaUACCcuuGCCG- -5'
14328 3' -58.9 NC_003521.1 + 170872 0.71 0.653191
Target:  5'- gGGGGCgGgCGCGGGUGgucaGGcGucCGGCg -3'
miRNA:   3'- -CCCCGgUgGCGUCCAUa---CC-CuuGCCG- -5'
14328 3' -58.9 NC_003521.1 + 123190 0.75 0.430694
Target:  5'- gGGGGaCCguagGCCGCauacggcgccGGGUAggacGGGGGCGGCg -3'
miRNA:   3'- -CCCC-GG----UGGCG----------UCCAUa---CCCUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 17477 0.73 0.519438
Target:  5'- -aGGCCGCCGCcgAGGccUGGGGcaccuaucuGCGGCa -3'
miRNA:   3'- ccCCGGUGGCG--UCCauACCCU---------UGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.