miRNA display CGI


Results 41 - 60 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14328 5' -55.5 NC_003521.1 + 28714 0.7 0.842736
Target:  5'- cGACCGUgCgCCAGaugguggcgcacGCCGAcaaccaGACGCGCg -3'
miRNA:   3'- aCUGGCAaG-GGUC------------UGGCUa-----CUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 106528 0.7 0.842736
Target:  5'- aUGGCgGUUCCCAGAagCGcUGAaaGCGCg -3'
miRNA:   3'- -ACUGgCAAGGGUCUg-GCuACUg-CGCG- -5'
14328 5' -55.5 NC_003521.1 + 56441 0.7 0.857965
Target:  5'- aGGCCGccucguggCCCAGGuCCGA-GAgGCGCc -3'
miRNA:   3'- aCUGGCaa------GGGUCU-GGCUaCUgCGCG- -5'
14328 5' -55.5 NC_003521.1 + 115967 0.7 0.857965
Target:  5'- -cGCCGcUCUucaaCGGACCcAUGGCGCGCg -3'
miRNA:   3'- acUGGCaAGG----GUCUGGcUACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 12690 0.7 0.857965
Target:  5'- cGACCGguucuacUCCaGGACCGAcggcUGcuACGCGCg -3'
miRNA:   3'- aCUGGCa------AGGgUCUGGCU----AC--UGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 14752 0.7 0.865299
Target:  5'- gGGCCGg--CCGcGGCCGG-GGCGCGCc -3'
miRNA:   3'- aCUGGCaagGGU-CUGGCUaCUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 91033 0.7 0.865299
Target:  5'- cGGCCGUUCgCGGAaCGccGugGCGUu -3'
miRNA:   3'- aCUGGCAAGgGUCUgGCuaCugCGCG- -5'
14328 5' -55.5 NC_003521.1 + 17338 0.7 0.865299
Target:  5'- cGAuCCGccccaccUCCCGGGCCG-UGACGCcgGCg -3'
miRNA:   3'- aCU-GGCa------AGGGUCUGGCuACUGCG--CG- -5'
14328 5' -55.5 NC_003521.1 + 89972 0.7 0.872437
Target:  5'- cGGCCGUUCgggguucaaCCGG-CgGGUGGCGCuGCg -3'
miRNA:   3'- aCUGGCAAG---------GGUCuGgCUACUGCG-CG- -5'
14328 5' -55.5 NC_003521.1 + 84989 0.7 0.872437
Target:  5'- -cACCGUgCCCuGguaACCGAUGACGCa- -3'
miRNA:   3'- acUGGCAaGGGuC---UGGCUACUGCGcg -5'
14328 5' -55.5 NC_003521.1 + 103584 0.7 0.872437
Target:  5'- -cGCCGUcggCCCcGGCCGGUG-CGCGg -3'
miRNA:   3'- acUGGCAa--GGGuCUGGCUACuGCGCg -5'
14328 5' -55.5 NC_003521.1 + 228779 0.7 0.879376
Target:  5'- aUGACC--UCCaggugcaaCAGGCCG-UGACGUGCg -3'
miRNA:   3'- -ACUGGcaAGG--------GUCUGGCuACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 209001 0.7 0.879376
Target:  5'- --uUCGgcgCCCGGGCCGA-GACgGCGCu -3'
miRNA:   3'- acuGGCaa-GGGUCUGGCUaCUG-CGCG- -5'
14328 5' -55.5 NC_003521.1 + 214026 0.69 0.891993
Target:  5'- -cGCCGUUCCCAuACCugcGGUGGCcccccgaGCGCg -3'
miRNA:   3'- acUGGCAAGGGUcUGG---CUACUG-------CGCG- -5'
14328 5' -55.5 NC_003521.1 + 180544 0.69 0.892636
Target:  5'- -cACCGUcUCCgCGGcguACCGggGugGCGCg -3'
miRNA:   3'- acUGGCA-AGG-GUC---UGGCuaCugCGCG- -5'
14328 5' -55.5 NC_003521.1 + 119940 0.69 0.892636
Target:  5'- cGACCa--CCUgcacGGGCgUGAUGACGCGCg -3'
miRNA:   3'- aCUGGcaaGGG----UCUG-GCUACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 89582 0.69 0.895187
Target:  5'- -cGCCG-UCCCAGGCCGcgGAagaagaugaagaagGCGCc -3'
miRNA:   3'- acUGGCaAGGGUCUGGCuaCUg-------------CGCG- -5'
14328 5' -55.5 NC_003521.1 + 191212 0.69 0.897705
Target:  5'- -cGCCGUguccuccgcgucCCCAGcGCCGGUGACGCc- -3'
miRNA:   3'- acUGGCAa-----------GGGUC-UGGCUACUGCGcg -5'
14328 5' -55.5 NC_003521.1 + 61904 0.69 0.89895
Target:  5'- -cGCCGUUCCCcgacguGAUgGGUGAC-CGCu -3'
miRNA:   3'- acUGGCAAGGGu-----CUGgCUACUGcGCG- -5'
14328 5' -55.5 NC_003521.1 + 148828 0.69 0.89895
Target:  5'- cGACCGccugCCCucGGCCGAgguGCGUGCc -3'
miRNA:   3'- aCUGGCaa--GGGu-CUGGCUac-UGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.