miRNA display CGI


Results 41 - 60 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14328 5' -55.5 NC_003521.1 + 96797 0.66 0.967492
Target:  5'- cGGCgGcgCUCGGGCaCGAUcGCGCGUa -3'
miRNA:   3'- aCUGgCaaGGGUCUG-GCUAcUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 42677 0.66 0.967492
Target:  5'- cGACUcagUCCuCAGagccGCCGA-GAUGCGCg -3'
miRNA:   3'- aCUGGca-AGG-GUC----UGGCUaCUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 50299 0.67 0.964409
Target:  5'- -uGCCGUuaggUUUCGGGCCGGUacGGCGCGa -3'
miRNA:   3'- acUGGCA----AGGGUCUGGCUA--CUGCGCg -5'
14328 5' -55.5 NC_003521.1 + 54107 0.67 0.964409
Target:  5'- aGGUCGUUCuCCAGACCGGagccgucGuCGUGCa -3'
miRNA:   3'- aCUGGCAAG-GGUCUGGCUa------CuGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 236123 0.67 0.964409
Target:  5'- uUGACUGUUUCgGGACgGGacggggggGAcCGCGCg -3'
miRNA:   3'- -ACUGGCAAGGgUCUGgCUa-------CU-GCGCG- -5'
14328 5' -55.5 NC_003521.1 + 121487 0.67 0.964409
Target:  5'- aGGCCGgacCCCuGcCCGAccGCGUGCg -3'
miRNA:   3'- aCUGGCaa-GGGuCuGGCUacUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 74590 0.67 0.964409
Target:  5'- cGGCgCGgcgUCCCGcGGCCG---GCGCGCc -3'
miRNA:   3'- aCUG-GCa--AGGGU-CUGGCuacUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 8016 0.67 0.964409
Target:  5'- -cGCCGUagcUCCAGACCGccgGAgGCGUu -3'
miRNA:   3'- acUGGCAa--GGGUCUGGCua-CUgCGCG- -5'
14328 5' -55.5 NC_003521.1 + 149904 0.67 0.96409
Target:  5'- cGugCGUUgCCCGGcaacaacaccgacGCCGAcGcAUGCGCa -3'
miRNA:   3'- aCugGCAA-GGGUC-------------UGGCUaC-UGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 38187 0.67 0.963446
Target:  5'- gGGCCGcUCCCAGugCucgcggucgaggucGGgcagGAgGCGCa -3'
miRNA:   3'- aCUGGCaAGGGUCugG--------------CUa---CUgCGCG- -5'
14328 5' -55.5 NC_003521.1 + 229064 0.67 0.963446
Target:  5'- aUGAgCCGUcCCCAGGgcgagucgggcccgUCGAUGACG-GCc -3'
miRNA:   3'- -ACU-GGCAaGGGUCU--------------GGCUACUGCgCG- -5'
14328 5' -55.5 NC_003521.1 + 238415 0.67 0.963446
Target:  5'- gGGCCGcUCCCAGugCucgcggucgaggucGGgcagGAgGCGCa -3'
miRNA:   3'- aCUGGCaAGGGUCugG--------------CUa---CUgCGCG- -5'
14328 5' -55.5 NC_003521.1 + 31545 0.67 0.961127
Target:  5'- gGACgGUguaCUggAGGCCGaAUGGCGCGUc -3'
miRNA:   3'- aCUGgCAag-GG--UCUGGC-UACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 208064 0.67 0.957642
Target:  5'- -uACCuugaCCCAGAacagCGGUGugGCGCa -3'
miRNA:   3'- acUGGcaa-GGGUCUg---GCUACugCGCG- -5'
14328 5' -55.5 NC_003521.1 + 56794 0.67 0.957642
Target:  5'- aUGGCCG--CCCA-ACCGgcGuCGCGCg -3'
miRNA:   3'- -ACUGGCaaGGGUcUGGCuaCuGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 2823 0.67 0.957642
Target:  5'- aGACUGgcgaCCCAgccGACCGAUcgccGACGaCGCc -3'
miRNA:   3'- aCUGGCaa--GGGU---CUGGCUA----CUGC-GCG- -5'
14328 5' -55.5 NC_003521.1 + 95434 0.67 0.957642
Target:  5'- aUGAgCaggCCCAGGCCGu---CGCGCa -3'
miRNA:   3'- -ACUgGcaaGGGUCUGGCuacuGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 31824 0.67 0.957642
Target:  5'- -cGCCGUcucggCCCGGgcGCCGAagGugGCGUu -3'
miRNA:   3'- acUGGCAa----GGGUC--UGGCUa-CugCGCG- -5'
14328 5' -55.5 NC_003521.1 + 120045 0.67 0.957282
Target:  5'- cGGCCGUguucaccuggCCCcaguggcAGGCCGGcauccaGGCGCGCc -3'
miRNA:   3'- aCUGGCAa---------GGG-------UCUGGCUa-----CUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 56614 0.67 0.953948
Target:  5'- aUGGCCGccacgUCCCAGAgguccaCGAaGAaGCGCa -3'
miRNA:   3'- -ACUGGCa----AGGGUCUg-----GCUaCUgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.