miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14328 5' -55.5 NC_003521.1 + 181072 0.66 0.975599
Target:  5'- gUGugCaggCCCAGua-GGUGACGUGCu -3'
miRNA:   3'- -ACugGcaaGGGUCuggCUACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 505 0.66 0.975599
Target:  5'- -cGCgGUUUUCAGG--GGUGACGCGCg -3'
miRNA:   3'- acUGgCAAGGGUCUggCUACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 102633 0.66 0.975599
Target:  5'- aGAccCCGUUgcCCCAGGCCaucGAgacaGAgGCGCg -3'
miRNA:   3'- aCU--GGCAA--GGGUCUGG---CUa---CUgCGCG- -5'
14328 5' -55.5 NC_003521.1 + 53379 0.66 0.975355
Target:  5'- aGACCGagCaggagCAGGCCGcggcgagcaggggAUGGCGCGUc -3'
miRNA:   3'- aCUGGCaaGg----GUCUGGC-------------UACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 183182 0.66 0.973081
Target:  5'- -cGCCGUcccgUCCCGuuucGGCCcccGUGACGUGCc -3'
miRNA:   3'- acUGGCA----AGGGU----CUGGc--UACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 112323 0.66 0.973081
Target:  5'- cGACuCGcugUCgCAGGCCG---GCGCGCa -3'
miRNA:   3'- aCUG-GCa--AGgGUCUGGCuacUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 51053 0.66 0.973081
Target:  5'- aUGGCCcaagUCuCUAGACCGAaguUGGCGggaCGCa -3'
miRNA:   3'- -ACUGGca--AG-GGUCUGGCU---ACUGC---GCG- -5'
14328 5' -55.5 NC_003521.1 + 17669 0.66 0.973081
Target:  5'- cGGCC---UCCAGACUGcgGGCGUGg -3'
miRNA:   3'- aCUGGcaaGGGUCUGGCuaCUGCGCg -5'
14328 5' -55.5 NC_003521.1 + 141349 0.66 0.972819
Target:  5'- -uGCgGUUCCCAcgggugcggcggcGGUCGGUGACGCGg -3'
miRNA:   3'- acUGgCAAGGGU-------------CUGGCUACUGCGCg -5'
14328 5' -55.5 NC_003521.1 + 48630 0.66 0.970381
Target:  5'- -cGCCGacgaaaCCCAaACCGGUGugGcCGCg -3'
miRNA:   3'- acUGGCaa----GGGUcUGGCUACugC-GCG- -5'
14328 5' -55.5 NC_003521.1 + 89173 0.66 0.970381
Target:  5'- gGGCCGUgggCCUGGcCCugcugGACGUGCu -3'
miRNA:   3'- aCUGGCAa--GGGUCuGGcua--CUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 34581 0.66 0.970381
Target:  5'- aGGCUGacgCCGGGCUGcaGGCGCGCg -3'
miRNA:   3'- aCUGGCaagGGUCUGGCuaCUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 236358 0.66 0.970381
Target:  5'- gGAUCGccgCCCAGACCGucaGC-CGCa -3'
miRNA:   3'- aCUGGCaa-GGGUCUGGCuacUGcGCG- -5'
14328 5' -55.5 NC_003521.1 + 42677 0.66 0.967492
Target:  5'- cGACUcagUCCuCAGagccGCCGA-GAUGCGCg -3'
miRNA:   3'- aCUGGca-AGG-GUC----UGGCUaCUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 200371 0.66 0.967492
Target:  5'- --uCCGUUCCgC-GACCGGgcuagaGCGCGCg -3'
miRNA:   3'- acuGGCAAGG-GuCUGGCUac----UGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 37215 0.66 0.967492
Target:  5'- gGACUGUUCuUCAG--CGgcGACGCGCu -3'
miRNA:   3'- aCUGGCAAG-GGUCugGCuaCUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 96797 0.66 0.967492
Target:  5'- cGGCgGcgCUCGGGCaCGAUcGCGCGUa -3'
miRNA:   3'- aCUGgCaaGGGUCUG-GCUAcUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 112702 0.66 0.967492
Target:  5'- gGGCCGccCUCGGACCccAUGAUGCaGCg -3'
miRNA:   3'- aCUGGCaaGGGUCUGGc-UACUGCG-CG- -5'
14328 5' -55.5 NC_003521.1 + 97916 0.66 0.967492
Target:  5'- -cGCCGacgUCgCCGG-CUGAUGGCGcCGCu -3'
miRNA:   3'- acUGGCa--AG-GGUCuGGCUACUGC-GCG- -5'
14328 5' -55.5 NC_003521.1 + 5456 0.66 0.967492
Target:  5'- --cCCG-UCCCAGA-UGGUGAagaGCGCg -3'
miRNA:   3'- acuGGCaAGGGUCUgGCUACUg--CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.