miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14328 5' -55.5 NC_003521.1 + 28714 0.7 0.842736
Target:  5'- cGACCGUgCgCCAGaugguggcgcacGCCGAcaaccaGACGCGCg -3'
miRNA:   3'- aCUGGCAaG-GGUC------------UGGCUa-----CUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 30206 0.67 0.950043
Target:  5'- aGGCCGacUCCgAGAUCGGccggccguUGGCGuCGCg -3'
miRNA:   3'- aCUGGCa-AGGgUCUGGCU--------ACUGC-GCG- -5'
14328 5' -55.5 NC_003521.1 + 30454 0.71 0.801676
Target:  5'- cGGCCGa----GGguGCCGAUGACGCGCa -3'
miRNA:   3'- aCUGGCaagggUC--UGGCUACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 31423 0.66 0.977939
Target:  5'- cUGG-CGUgCagCAGGCgGAUGAUGCGCa -3'
miRNA:   3'- -ACUgGCAaGg-GUCUGgCUACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 31545 0.67 0.961127
Target:  5'- gGACgGUguaCUggAGGCCGaAUGGCGCGUc -3'
miRNA:   3'- aCUGgCAag-GG--UCUGGC-UACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 31824 0.67 0.957642
Target:  5'- -cGCCGUcucggCCCGGgcGCCGAagGugGCGUu -3'
miRNA:   3'- acUGGCAa----GGGUC--UGGCUa-CugCGCG- -5'
14328 5' -55.5 NC_003521.1 + 33085 0.66 0.977939
Target:  5'- aUGGCC-UUCugcacgggcuCCAGccaGCCGAUGACgGCGUa -3'
miRNA:   3'- -ACUGGcAAG----------GGUC---UGGCUACUG-CGCG- -5'
14328 5' -55.5 NC_003521.1 + 33128 0.67 0.945924
Target:  5'- gGGCC-UUCuCCAGcacGCCGAUGACGaaGCc -3'
miRNA:   3'- aCUGGcAAG-GGUC---UGGCUACUGCg-CG- -5'
14328 5' -55.5 NC_003521.1 + 33209 0.66 0.978828
Target:  5'- aGGCCGgcgagccgCCCAGACgGAucuugcagccggcguUGAgcuggcacaCGCGCa -3'
miRNA:   3'- aCUGGCaa------GGGUCUGgCU---------------ACU---------GCGCG- -5'
14328 5' -55.5 NC_003521.1 + 33459 0.67 0.94883
Target:  5'- -cGCUGUUCUCGGugucggccggccgcGCCGAcccgaggGACGCGCc -3'
miRNA:   3'- acUGGCAAGGGUC--------------UGGCUa------CUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 34354 0.67 0.950043
Target:  5'- aGGCCGUgaggCCCAGGuCCug-GGCguuGCGCa -3'
miRNA:   3'- aCUGGCAa---GGGUCU-GGcuaCUG---CGCG- -5'
14328 5' -55.5 NC_003521.1 + 34521 0.71 0.801676
Target:  5'- cGGCCG----CGGGCCGA-GACGCGCg -3'
miRNA:   3'- aCUGGCaaggGUCUGGCUaCUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 34581 0.66 0.970381
Target:  5'- aGGCUGacgCCGGGCUGcaGGCGCGCg -3'
miRNA:   3'- aCUGGCaagGGUCUGGCuaCUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 36346 0.68 0.937031
Target:  5'- cGACUuuagGggCUCGGGCUGgcGugGCGCg -3'
miRNA:   3'- aCUGG----CaaGGGUCUGGCuaCugCGCG- -5'
14328 5' -55.5 NC_003521.1 + 37215 0.66 0.967492
Target:  5'- gGACUGUUCuUCAG--CGgcGACGCGCu -3'
miRNA:   3'- aCUGGCAAG-GGUCugGCuaCUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 38187 0.67 0.963446
Target:  5'- gGGCCGcUCCCAGugCucgcggucgaggucGGgcagGAgGCGCa -3'
miRNA:   3'- aCUGGCaAGGGUCugG--------------CUa---CUgCGCG- -5'
14328 5' -55.5 NC_003521.1 + 39445 0.72 0.793007
Target:  5'- cGGCCGagCCCGGcGCCGAgGGcCGCGUc -3'
miRNA:   3'- aCUGGCaaGGGUC-UGGCUaCU-GCGCG- -5'
14328 5' -55.5 NC_003521.1 + 39814 0.67 0.950043
Target:  5'- -cGCCGggcggUCCUccGCCGAUGGCGCcuGCu -3'
miRNA:   3'- acUGGCa----AGGGucUGGCUACUGCG--CG- -5'
14328 5' -55.5 NC_003521.1 + 40275 0.76 0.55722
Target:  5'- uUGGCCGUUUgcacgccuggggacgCCAGACCGGUGgACGCa- -3'
miRNA:   3'- -ACUGGCAAG---------------GGUCUGGCUAC-UGCGcg -5'
14328 5' -55.5 NC_003521.1 + 42677 0.66 0.967492
Target:  5'- cGACUcagUCCuCAGagccGCCGA-GAUGCGCg -3'
miRNA:   3'- aCUGGca-AGG-GUC----UGGCUaCUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.