miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14328 5' -55.5 NC_003521.1 + 505 0.66 0.975599
Target:  5'- -cGCgGUUUUCAGG--GGUGACGCGCg -3'
miRNA:   3'- acUGgCAAGGGUCUggCUACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 1929 0.67 0.950043
Target:  5'- -cGCCGag-CCAGACCGcagGACGCGg -3'
miRNA:   3'- acUGGCaagGGUCUGGCua-CUGCGCg -5'
14328 5' -55.5 NC_003521.1 + 2823 0.67 0.957642
Target:  5'- aGACUGgcgaCCCAgccGACCGAUcgccGACGaCGCc -3'
miRNA:   3'- aCUGGCaa--GGGU---CUGGCUA----CUGC-GCG- -5'
14328 5' -55.5 NC_003521.1 + 5456 0.66 0.967492
Target:  5'- --cCCG-UCCCAGA-UGGUGAagaGCGCg -3'
miRNA:   3'- acuGGCaAGGGUCUgGCUACUg--CGCG- -5'
14328 5' -55.5 NC_003521.1 + 8016 0.67 0.964409
Target:  5'- -cGCCGUagcUCCAGACCGccgGAgGCGUu -3'
miRNA:   3'- acUGGCAa--GGGUCUGGCua-CUgCGCG- -5'
14328 5' -55.5 NC_003521.1 + 8527 0.73 0.700246
Target:  5'- uUGAUUGUgCCCGGACCGugGGCGCGa -3'
miRNA:   3'- -ACUGGCAaGGGUCUGGCuaCUGCGCg -5'
14328 5' -55.5 NC_003521.1 + 12690 0.7 0.857965
Target:  5'- cGACCGguucuacUCCaGGACCGAcggcUGcuACGCGCg -3'
miRNA:   3'- aCUGGCa------AGGgUCUGGCU----AC--UGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 13784 0.84 0.219541
Target:  5'- aGGCCgGUUCUCAGACCGA-GGCGCGUu -3'
miRNA:   3'- aCUGG-CAAGGGUCUGGCUaCUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 14752 0.7 0.865299
Target:  5'- gGGCCGg--CCGcGGCCGG-GGCGCGCc -3'
miRNA:   3'- aCUGGCaagGGU-CUGGCUaCUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 16649 0.69 0.90505
Target:  5'- cGACCGcUUUCGGGCCGA-GAUGCu- -3'
miRNA:   3'- aCUGGCaAGGGUCUGGCUaCUGCGcg -5'
14328 5' -55.5 NC_003521.1 + 17223 0.72 0.775274
Target:  5'- aGGCCGaggUCUCggAGGCCGAggugGAgGCGCg -3'
miRNA:   3'- aCUGGCa--AGGG--UCUGGCUa---CUgCGCG- -5'
14328 5' -55.5 NC_003521.1 + 17338 0.7 0.865299
Target:  5'- cGAuCCGccccaccUCCCGGGCCG-UGACGCcgGCg -3'
miRNA:   3'- aCU-GGCa------AGGGUCUGGCuACUGCG--CG- -5'
14328 5' -55.5 NC_003521.1 + 17511 0.78 0.460179
Target:  5'- cGGCgGUUCCCGGcCCGgcGGCGCGg -3'
miRNA:   3'- aCUGgCAAGGGUCuGGCuaCUGCGCg -5'
14328 5' -55.5 NC_003521.1 + 17669 0.66 0.973081
Target:  5'- cGGCC---UCCAGACUGcgGGCGUGg -3'
miRNA:   3'- aCUGGcaaGGGUCUGGCuaCUGCGCg -5'
14328 5' -55.5 NC_003521.1 + 18078 0.74 0.651357
Target:  5'- gUGGCCGUagCCCAGAC----GGCGCGCg -3'
miRNA:   3'- -ACUGGCAa-GGGUCUGgcuaCUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 25221 0.73 0.728057
Target:  5'- cGGCCGUguaucucccUCCCAGGcuCCGAgcccgguUGACgGCGCg -3'
miRNA:   3'- aCUGGCA---------AGGGUCU--GGCU-------ACUG-CGCG- -5'
14328 5' -55.5 NC_003521.1 + 26096 0.75 0.592289
Target:  5'- cUGACCGaagCCCAGACaGAcGACGCGg -3'
miRNA:   3'- -ACUGGCaa-GGGUCUGgCUaCUGCGCg -5'
14328 5' -55.5 NC_003521.1 + 26840 1.12 0.003585
Target:  5'- uUGACCGUUCCCAGACCGAUGACGCGCg -3'
miRNA:   3'- -ACUGGCAAGGGUCUGGCUACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 27107 0.69 0.90505
Target:  5'- cGACgGcgCgCAGGCCGGUG-CGgGCg -3'
miRNA:   3'- aCUGgCaaGgGUCUGGCUACuGCgCG- -5'
14328 5' -55.5 NC_003521.1 + 27458 0.69 0.916594
Target:  5'- cGGCCGUgagCgCCAGGCUGGccagguccgucaUGugGCGg -3'
miRNA:   3'- aCUGGCAa--G-GGUCUGGCU------------ACugCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.