miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14328 5' -55.5 NC_003521.1 + 148432 0.66 0.977713
Target:  5'- cGGCCGcgCCgGcggcuccagggguGGCCGGUG-CGUGCu -3'
miRNA:   3'- aCUGGCaaGGgU-------------CUGGCUACuGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 227106 0.66 0.967492
Target:  5'- cUGAgCgGUUCCCAGcCC--UGGCGCaGCg -3'
miRNA:   3'- -ACU-GgCAAGGGUCuGGcuACUGCG-CG- -5'
14328 5' -55.5 NC_003521.1 + 124228 0.66 0.975599
Target:  5'- cGACCGggCCCGauuCCGAaggguUGGgucgcCGCGCg -3'
miRNA:   3'- aCUGGCaaGGGUcu-GGCU-----ACU-----GCGCG- -5'
14328 5' -55.5 NC_003521.1 + 17669 0.66 0.973081
Target:  5'- cGGCC---UCCAGACUGcgGGCGUGg -3'
miRNA:   3'- aCUGGcaaGGGUCUGGCuaCUGCGCg -5'
14328 5' -55.5 NC_003521.1 + 96797 0.66 0.967492
Target:  5'- cGGCgGcgCUCGGGCaCGAUcGCGCGUa -3'
miRNA:   3'- aCUGgCaaGGGUCUG-GCUAcUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 42677 0.66 0.967492
Target:  5'- cGACUcagUCCuCAGagccGCCGA-GAUGCGCg -3'
miRNA:   3'- aCUGGca-AGG-GUC----UGGCUaCUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 154142 0.66 0.975599
Target:  5'- cGGCCcg--CCAGAUaCGAcGACGCGCu -3'
miRNA:   3'- aCUGGcaagGGUCUG-GCUaCUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 83594 0.66 0.977939
Target:  5'- -aGCCGcUCCUGGGCCu-UGAUGCaGCg -3'
miRNA:   3'- acUGGCaAGGGUCUGGcuACUGCG-CG- -5'
14328 5' -55.5 NC_003521.1 + 34581 0.66 0.970381
Target:  5'- aGGCUGacgCCGGGCUGcaGGCGCGCg -3'
miRNA:   3'- aCUGGCaagGGUCUGGCuaCUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 236358 0.66 0.970381
Target:  5'- gGAUCGccgCCCAGACCGucaGC-CGCa -3'
miRNA:   3'- aCUGGCaa-GGGUCUGGCuacUGcGCG- -5'
14328 5' -55.5 NC_003521.1 + 112599 0.66 0.977939
Target:  5'- cGACCGcgCCauccagaAGAUgGAcuucgugGACGCGCu -3'
miRNA:   3'- aCUGGCaaGGg------UCUGgCUa------CUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 83628 0.66 0.977713
Target:  5'- -uGCCGUagcccaccUCCgAGACCuucugcaGAUaGGCGCGCu -3'
miRNA:   3'- acUGGCA--------AGGgUCUGG-------CUA-CUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 51053 0.66 0.973081
Target:  5'- aUGGCCcaagUCuCUAGACCGAaguUGGCGggaCGCa -3'
miRNA:   3'- -ACUGGca--AG-GGUCUGGCU---ACUGC---GCG- -5'
14328 5' -55.5 NC_003521.1 + 141349 0.66 0.972819
Target:  5'- -uGCgGUUCCCAcgggugcggcggcGGUCGGUGACGCGg -3'
miRNA:   3'- acUGgCAAGGGU-------------CUGGCUACUGCGCg -5'
14328 5' -55.5 NC_003521.1 + 200732 0.66 0.975599
Target:  5'- -cGCgGUUUUCAGG--GGUGACGCGCg -3'
miRNA:   3'- acUGgCAAGGGUCUggCUACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 33085 0.66 0.977939
Target:  5'- aUGGCC-UUCugcacgggcuCCAGccaGCCGAUGACgGCGUa -3'
miRNA:   3'- -ACUGGcAAG----------GGUC---UGGCUACUG-CGCG- -5'
14328 5' -55.5 NC_003521.1 + 65238 0.66 0.977939
Target:  5'- cUGGCCGg-CCUGGAuCCGc--GCGCGCa -3'
miRNA:   3'- -ACUGGCaaGGGUCU-GGCuacUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 47486 0.66 0.975599
Target:  5'- aGGCUGUUgaaguccucggCCCGGACCGc-GAUGCaGCc -3'
miRNA:   3'- aCUGGCAA-----------GGGUCUGGCuaCUGCG-CG- -5'
14328 5' -55.5 NC_003521.1 + 101187 0.66 0.977713
Target:  5'- cGuCCGcgCCCGgcgggcggaucuuGACCGA-GAUGUGCa -3'
miRNA:   3'- aCuGGCaaGGGU-------------CUGGCUaCUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 37215 0.66 0.967492
Target:  5'- gGACUGUUCuUCAG--CGgcGACGCGCu -3'
miRNA:   3'- aCUGGCAAG-GGUCugGCuaCUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.