miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14328 5' -55.5 NC_003521.1 + 106528 0.7 0.842736
Target:  5'- aUGGCgGUUCCCAGAagCGcUGAaaGCGCg -3'
miRNA:   3'- -ACUGgCAAGGGUCUg-GCuACUg-CGCG- -5'
14328 5' -55.5 NC_003521.1 + 153825 0.72 0.784204
Target:  5'- cGcCCGUUUCCAcgcucuGACgGAUgGACGCGCu -3'
miRNA:   3'- aCuGGCAAGGGU------CUGgCUA-CUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 39445 0.72 0.793007
Target:  5'- cGGCCGagCCCGGcGCCGAgGGcCGCGUc -3'
miRNA:   3'- aCUGGCaaGGGUC-UGGCUaCU-GCGCG- -5'
14328 5' -55.5 NC_003521.1 + 30454 0.71 0.801676
Target:  5'- cGGCCGa----GGguGCCGAUGACGCGCa -3'
miRNA:   3'- aCUGGCaagggUC--UGGCUACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 127458 0.71 0.801676
Target:  5'- cUGGCCGUUguugacgccCgCCAGcGCCGA-GAUGCGCg -3'
miRNA:   3'- -ACUGGCAA---------G-GGUC-UGGCUaCUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 34521 0.71 0.801676
Target:  5'- cGGCCG----CGGGCCGA-GACGCGCg -3'
miRNA:   3'- aCUGGCaaggGUCUGGCUaCUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 135755 0.71 0.821885
Target:  5'- gGA-CGUUCCCgGGACCGAaggcgguggcggcagUGGCGCuGCg -3'
miRNA:   3'- aCUgGCAAGGG-UCUGGCU---------------ACUGCG-CG- -5'
14328 5' -55.5 NC_003521.1 + 76951 0.71 0.826797
Target:  5'- gGugCGUUCCagcaugucgcGGCCGAUG-CGCGUg -3'
miRNA:   3'- aCugGCAAGGgu--------CUGGCUACuGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 28714 0.7 0.842736
Target:  5'- cGACCGUgCgCCAGaugguggcgcacGCCGAcaaccaGACGCGCg -3'
miRNA:   3'- aCUGGCAaG-GGUC------------UGGCUa-----CUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 227350 0.72 0.784204
Target:  5'- --cCCGUcgCCCAGACCGucGACgGCGCu -3'
miRNA:   3'- acuGGCAa-GGGUCUGGCuaCUG-CGCG- -5'
14328 5' -55.5 NC_003521.1 + 207046 0.72 0.784204
Target:  5'- gUGGCUGggCCgCAGGCCGGaGGCGuUGCa -3'
miRNA:   3'- -ACUGGCaaGG-GUCUGGCUaCUGC-GCG- -5'
14328 5' -55.5 NC_003521.1 + 143901 0.72 0.766225
Target:  5'- gUGGCCGUaUUCCAGGagaCGGgcacGGCGCGCc -3'
miRNA:   3'- -ACUGGCA-AGGGUCUg--GCUa---CUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 17511 0.78 0.460179
Target:  5'- cGGCgGUUCCCGGcCCGgcGGCGCGg -3'
miRNA:   3'- aCUGgCAAGGGUCuGGCuaCUGCGCg -5'
14328 5' -55.5 NC_003521.1 + 240503 0.76 0.550465
Target:  5'- uUGGCCGUUUgcacgcuggggacgCCAGACCGGUGgACGCa- -3'
miRNA:   3'- -ACUGGCAAG--------------GGUCUGGCUAC-UGCGcg -5'
14328 5' -55.5 NC_003521.1 + 138090 0.75 0.621791
Target:  5'- cUGGCCc-UCCCAGGCCGAggucuGCGUGCu -3'
miRNA:   3'- -ACUGGcaAGGGUCUGGCUac---UGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 43880 0.74 0.651357
Target:  5'- gGGCCGUcgCCCAcGcuaccggugcuGCCGGUGACGaCGCg -3'
miRNA:   3'- aCUGGCAa-GGGU-C-----------UGGCUACUGC-GCG- -5'
14328 5' -55.5 NC_003521.1 + 57354 0.74 0.680794
Target:  5'- cUGAagcugCCCAGACCGccgccGUGACGCGCc -3'
miRNA:   3'- -ACUggcaaGGGUCUGGC-----UACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 153090 0.73 0.738448
Target:  5'- gGGCCGgggCCCAccacGCCGccgGGCGCGCg -3'
miRNA:   3'- aCUGGCaa-GGGUc---UGGCua-CUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 84877 0.72 0.747804
Target:  5'- aGGCCG--CCCGGuCCGG-GugGCGCg -3'
miRNA:   3'- aCUGGCaaGGGUCuGGCUaCugCGCG- -5'
14328 5' -55.5 NC_003521.1 + 133750 0.72 0.747804
Target:  5'- cUGGCCGgcaggCCCGGcgauuCCGggGACGCGg -3'
miRNA:   3'- -ACUGGCaa---GGGUCu----GGCuaCUGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.