miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14328 5' -55.5 NC_003521.1 + 13784 0.84 0.219541
Target:  5'- aGGCCgGUUCUCAGACCGA-GGCGCGUu -3'
miRNA:   3'- aCUGG-CAAGGGUCUGGCUaCUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 195814 0.71 0.818578
Target:  5'- cGGCCGUgggaucggaUUCCAGAUCGAgcgaGAucuCGCGCg -3'
miRNA:   3'- aCUGGCA---------AGGGUCUGGCUa---CU---GCGCG- -5'
14328 5' -55.5 NC_003521.1 + 223322 0.71 0.834852
Target:  5'- gGGCCGggaaccgCCguGACCGgcGGCGcCGCu -3'
miRNA:   3'- aCUGGCaa-----GGguCUGGCuaCUGC-GCG- -5'
14328 5' -55.5 NC_003521.1 + 112599 0.66 0.977939
Target:  5'- cGACCGcgCCauccagaAGAUgGAcuucgugGACGCGCu -3'
miRNA:   3'- aCUGGCaaGGg------UCUGgCUa------CUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 90571 0.75 0.592289
Target:  5'- cGGCCGcggUgCAGGCCGAcgUGACGUGCu -3'
miRNA:   3'- aCUGGCaa-GgGUCUGGCU--ACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 76375 0.75 0.631648
Target:  5'- cGACCGUgacggCCGcGGCCGcgGugGCGCu -3'
miRNA:   3'- aCUGGCAag---GGU-CUGGCuaCugCGCG- -5'
14328 5' -55.5 NC_003521.1 + 121668 0.74 0.651357
Target:  5'- cGGCCuGUUUCCucggaGGGCCG-UGAUGCGCg -3'
miRNA:   3'- aCUGG-CAAGGG-----UCUGGCuACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 234469 0.74 0.651357
Target:  5'- cGACCGgcCCCucugGGAuCCGGaucUGGCGCGCg -3'
miRNA:   3'- aCUGGCaaGGG----UCU-GGCU---ACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 197927 0.73 0.700246
Target:  5'- -cGCUGggCuCCAGAUCGAcgGGCGCGCg -3'
miRNA:   3'- acUGGCaaG-GGUCUGGCUa-CUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 130171 0.71 0.818578
Target:  5'- cGACCGggCCguGACCGugccGGCGCccgGCg -3'
miRNA:   3'- aCUGGCaaGGguCUGGCua--CUGCG---CG- -5'
14328 5' -55.5 NC_003521.1 + 25221 0.73 0.728057
Target:  5'- cGGCCGUguaucucccUCCCAGGcuCCGAgcccgguUGACgGCGCg -3'
miRNA:   3'- aCUGGCA---------AGGGUCU--GGCU-------ACUG-CGCG- -5'
14328 5' -55.5 NC_003521.1 + 8527 0.73 0.700246
Target:  5'- uUGAUUGUgCCCGGACCGugGGCGCGa -3'
miRNA:   3'- -ACUGGCAaGGGUCUGGCuaCUGCGCg -5'
14328 5' -55.5 NC_003521.1 + 113331 0.78 0.460179
Target:  5'- gUGGCCa-UCCUGcGACUGGUGACGCGCa -3'
miRNA:   3'- -ACUGGcaAGGGU-CUGGCUACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 17223 0.72 0.775274
Target:  5'- aGGCCGaggUCUCggAGGCCGAggugGAgGCGCg -3'
miRNA:   3'- aCUGGCa--AGGG--UCUGGCUa---CUgCGCG- -5'
14328 5' -55.5 NC_003521.1 + 40275 0.76 0.55722
Target:  5'- uUGGCCGUUUgcacgccuggggacgCCAGACCGGUGgACGCa- -3'
miRNA:   3'- -ACUGGCAAG---------------GGUCUGGCUAC-UGCGcg -5'
14328 5' -55.5 NC_003521.1 + 171872 0.74 0.680794
Target:  5'- cUGGCCGUcUCCCGGACCa--GACGCu- -3'
miRNA:   3'- -ACUGGCA-AGGGUCUGGcuaCUGCGcg -5'
14328 5' -55.5 NC_003521.1 + 95560 0.71 0.801676
Target:  5'- cUGGCCG--CCgAGGCCGAgGAgGCGCc -3'
miRNA:   3'- -ACUGGCaaGGgUCUGGCUaCUgCGCG- -5'
14328 5' -55.5 NC_003521.1 + 89894 0.71 0.834055
Target:  5'- cUGACCGcgCUCGGcccacacGCCGuggaagGGCGCGCa -3'
miRNA:   3'- -ACUGGCaaGGGUC-------UGGCua----CUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 26096 0.75 0.592289
Target:  5'- cUGACCGaagCCCAGACaGAcGACGCGg -3'
miRNA:   3'- -ACUGGCaa-GGGUCUGgCUaCUGCGCg -5'
14328 5' -55.5 NC_003521.1 + 18078 0.74 0.651357
Target:  5'- gUGGCCGUagCCCAGAC----GGCGCGCg -3'
miRNA:   3'- -ACUGGCAa-GGGUCUGgcuaCUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.