Results 21 - 40 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14328 | 5' | -55.5 | NC_003521.1 | + | 112323 | 0.66 | 0.973081 |
Target: 5'- cGACuCGcugUCgCAGGCCG---GCGCGCa -3' miRNA: 3'- aCUG-GCa--AGgGUCUGGCuacUGCGCG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 137360 | 0.66 | 0.975599 |
Target: 5'- aGuuCGUcgCCUAcGCCG-UGGCGCGCa -3' miRNA: 3'- aCugGCAa-GGGUcUGGCuACUGCGCG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 183182 | 0.66 | 0.973081 |
Target: 5'- -cGCCGUcccgUCCCGuuucGGCCcccGUGACGUGCc -3' miRNA: 3'- acUGGCA----AGGGU----CUGGc--UACUGCGCG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 53379 | 0.66 | 0.975355 |
Target: 5'- aGACCGagCaggagCAGGCCGcggcgagcaggggAUGGCGCGUc -3' miRNA: 3'- aCUGGCaaGg----GUCUGGC-------------UACUGCGCG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 186496 | 0.66 | 0.967492 |
Target: 5'- gUGcACCGUgcgCCUgguGACgGAgcacGACGCGCu -3' miRNA: 3'- -AC-UGGCAa--GGGu--CUGgCUa---CUGCGCG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 161478 | 0.66 | 0.977713 |
Target: 5'- cUGGCCGUgUCCUuugcgcgAGACCcuGGUGGguCGCGUg -3' miRNA: 3'- -ACUGGCA-AGGG-------UCUGG--CUACU--GCGCG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 216859 | 0.66 | 0.977939 |
Target: 5'- cGACUGUU-CCAGGCCcGUGGaGCGg -3' miRNA: 3'- aCUGGCAAgGGUCUGGcUACUgCGCg -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 154142 | 0.66 | 0.975599 |
Target: 5'- cGGCCcg--CCAGAUaCGAcGACGCGCu -3' miRNA: 3'- aCUGGcaagGGUCUG-GCUaCUGCGCG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 33085 | 0.66 | 0.977939 |
Target: 5'- aUGGCC-UUCugcacgggcuCCAGccaGCCGAUGACgGCGUa -3' miRNA: 3'- -ACUGGcAAG----------GGUC---UGGCUACUG-CGCG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 83594 | 0.66 | 0.977939 |
Target: 5'- -aGCCGcUCCUGGGCCu-UGAUGCaGCg -3' miRNA: 3'- acUGGCaAGGGUCUGGcuACUGCG-CG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 112702 | 0.66 | 0.967492 |
Target: 5'- gGGCCGccCUCGGACCccAUGAUGCaGCg -3' miRNA: 3'- aCUGGCaaGGGUCUGGc-UACUGCG-CG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 181072 | 0.66 | 0.975599 |
Target: 5'- gUGugCaggCCCAGua-GGUGACGUGCu -3' miRNA: 3'- -ACugGcaaGGGUCuggCUACUGCGCG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 102633 | 0.66 | 0.975599 |
Target: 5'- aGAccCCGUUgcCCCAGGCCaucGAgacaGAgGCGCg -3' miRNA: 3'- aCU--GGCAA--GGGUCUGG---CUa---CUgCGCG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 89173 | 0.66 | 0.970381 |
Target: 5'- gGGCCGUgggCCUGGcCCugcugGACGUGCu -3' miRNA: 3'- aCUGGCAa--GGGUCuGGcua--CUGCGCG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 33209 | 0.66 | 0.978828 |
Target: 5'- aGGCCGgcgagccgCCCAGACgGAucuugcagccggcguUGAgcuggcacaCGCGCa -3' miRNA: 3'- aCUGGCaa------GGGUCUGgCU---------------ACU---------GCGCG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 97916 | 0.66 | 0.967492 |
Target: 5'- -cGCCGacgUCgCCGG-CUGAUGGCGcCGCu -3' miRNA: 3'- acUGGCa--AG-GGUCuGGCUACUGC-GCG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 505 | 0.66 | 0.975599 |
Target: 5'- -cGCgGUUUUCAGG--GGUGACGCGCg -3' miRNA: 3'- acUGgCAAGGGUCUggCUACUGCGCG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 48630 | 0.66 | 0.970381 |
Target: 5'- -cGCCGacgaaaCCCAaACCGGUGugGcCGCg -3' miRNA: 3'- acUGGCaa----GGGUcUGGCUACugC-GCG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 166667 | 0.66 | 0.977939 |
Target: 5'- cGGCCagcggcaCCUGGGCCccGUGGCGCGCc -3' miRNA: 3'- aCUGGcaa----GGGUCUGGc-UACUGCGCG- -5' |
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14328 | 5' | -55.5 | NC_003521.1 | + | 112599 | 0.66 | 0.977939 |
Target: 5'- cGACCGcgCCauccagaAGAUgGAcuucgugGACGCGCu -3' miRNA: 3'- aCUGGCaaGGg------UCUGgCUa------CUGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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