miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14328 5' -55.5 NC_003521.1 + 240503 0.76 0.550465
Target:  5'- uUGGCCGUUUgcacgcuggggacgCCAGACCGGUGgACGCa- -3'
miRNA:   3'- -ACUGGCAAG--------------GGUCUGGCUAC-UGCGcg -5'
14328 5' -55.5 NC_003521.1 + 240041 0.67 0.950043
Target:  5'- -cGCCGggcggUCCUccGCCGAUGGCGCcuGCu -3'
miRNA:   3'- acUGGCa----AGGGucUGGCUACUGCG--CG- -5'
14328 5' -55.5 NC_003521.1 + 238415 0.67 0.963446
Target:  5'- gGGCCGcUCCCAGugCucgcggucgaggucGGgcagGAgGCGCa -3'
miRNA:   3'- aCUGGCaAGGGUCugG--------------CUa---CUgCGCG- -5'
14328 5' -55.5 NC_003521.1 + 236358 0.66 0.970381
Target:  5'- gGAUCGccgCCCAGACCGucaGC-CGCa -3'
miRNA:   3'- aCUGGCaa-GGGUCUGGCuacUGcGCG- -5'
14328 5' -55.5 NC_003521.1 + 236123 0.67 0.964409
Target:  5'- uUGACUGUUUCgGGACgGGacggggggGAcCGCGCg -3'
miRNA:   3'- -ACUGGCAAGGgUCUGgCUa-------CU-GCGCG- -5'
14328 5' -55.5 NC_003521.1 + 235102 0.73 0.707008
Target:  5'- -cGCCGUgCCCGGGCCGuacacauaaccccgGUGACgGCGCc -3'
miRNA:   3'- acUGGCAaGGGUCUGGC--------------UACUG-CGCG- -5'
14328 5' -55.5 NC_003521.1 + 234469 0.74 0.651357
Target:  5'- cGACCGgcCCCucugGGAuCCGGaucUGGCGCGCg -3'
miRNA:   3'- aCUGGCaaGGG----UCU-GGCU---ACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 229064 0.67 0.963446
Target:  5'- aUGAgCCGUcCCCAGGgcgagucgggcccgUCGAUGACG-GCc -3'
miRNA:   3'- -ACU-GGCAaGGGUCU--------------GGCUACUGCgCG- -5'
14328 5' -55.5 NC_003521.1 + 228779 0.7 0.879376
Target:  5'- aUGACC--UCCaggugcaaCAGGCCG-UGACGUGCg -3'
miRNA:   3'- -ACUGGcaAGG--------GUCUGGCuACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 227350 0.72 0.784204
Target:  5'- --cCCGUcgCCCAGACCGucGACgGCGCu -3'
miRNA:   3'- acuGGCAa-GGGUCUGGCuaCUG-CGCG- -5'
14328 5' -55.5 NC_003521.1 + 227106 0.66 0.967492
Target:  5'- cUGAgCgGUUCCCAGcCC--UGGCGCaGCg -3'
miRNA:   3'- -ACU-GgCAAGGGUCuGGcuACUGCG-CG- -5'
14328 5' -55.5 NC_003521.1 + 224564 0.69 0.910353
Target:  5'- cUGACUaUUCCCGGACUGAccgcuauUGugGCu- -3'
miRNA:   3'- -ACUGGcAAGGGUCUGGCU-------ACugCGcg -5'
14328 5' -55.5 NC_003521.1 + 223322 0.71 0.834852
Target:  5'- gGGCCGggaaccgCCguGACCGgcGGCGcCGCu -3'
miRNA:   3'- aCUGGCaa-----GGguCUGGCuaCUGC-GCG- -5'
14328 5' -55.5 NC_003521.1 + 219190 0.68 0.927256
Target:  5'- cGGCUGagcCCCAGGCCcauGAUGGCGguCGCc -3'
miRNA:   3'- aCUGGCaa-GGGUCUGG---CUACUGC--GCG- -5'
14328 5' -55.5 NC_003521.1 + 216859 0.66 0.977939
Target:  5'- cGACUGUU-CCAGGCCcGUGGaGCGg -3'
miRNA:   3'- aCUGGCAAgGGUCUGGcUACUgCGCg -5'
14328 5' -55.5 NC_003521.1 + 214026 0.69 0.891993
Target:  5'- -cGCCGUUCCCAuACCugcGGUGGCcccccgaGCGCg -3'
miRNA:   3'- acUGGCAAGGGUcUGG---CUACUG-------CGCG- -5'
14328 5' -55.5 NC_003521.1 + 210899 0.68 0.927256
Target:  5'- gUGGCCG-UCgCCAGGCCcuUGACG-GCc -3'
miRNA:   3'- -ACUGGCaAG-GGUCUGGcuACUGCgCG- -5'
14328 5' -55.5 NC_003521.1 + 209001 0.7 0.879376
Target:  5'- --uUCGgcgCCCGGGCCGA-GACgGCGCu -3'
miRNA:   3'- acuGGCaa-GGGUCUGGCUaCUG-CGCG- -5'
14328 5' -55.5 NC_003521.1 + 208880 0.66 0.977939
Target:  5'- gUGcCUGUUCCUGGAccCCGAgGA-GCGCg -3'
miRNA:   3'- -ACuGGCAAGGGUCU--GGCUaCUgCGCG- -5'
14328 5' -55.5 NC_003521.1 + 208064 0.67 0.957642
Target:  5'- -uACCuugaCCCAGAacagCGGUGugGCGCa -3'
miRNA:   3'- acUGGcaa-GGGUCUg---GCUACugCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.