miRNA display CGI


Results 41 - 60 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14328 5' -55.5 NC_003521.1 + 43880 0.74 0.651357
Target:  5'- gGGCCGUcgCCCAcGcuaccggugcuGCCGGUGACGaCGCg -3'
miRNA:   3'- aCUGGCAa-GGGU-C-----------UGGCUACUGC-GCG- -5'
14328 5' -55.5 NC_003521.1 + 47486 0.66 0.975599
Target:  5'- aGGCUGUUgaaguccucggCCCGGACCGc-GAUGCaGCc -3'
miRNA:   3'- aCUGGCAA-----------GGGUCUGGCuaCUGCG-CG- -5'
14328 5' -55.5 NC_003521.1 + 48630 0.66 0.970381
Target:  5'- -cGCCGacgaaaCCCAaACCGGUGugGcCGCg -3'
miRNA:   3'- acUGGCaa----GGGUcUGGCUACugC-GCG- -5'
14328 5' -55.5 NC_003521.1 + 50299 0.67 0.964409
Target:  5'- -uGCCGUuaggUUUCGGGCCGGUacGGCGCGa -3'
miRNA:   3'- acUGGCA----AGGGUCUGGCUA--CUGCGCg -5'
14328 5' -55.5 NC_003521.1 + 51053 0.66 0.973081
Target:  5'- aUGGCCcaagUCuCUAGACCGAaguUGGCGggaCGCa -3'
miRNA:   3'- -ACUGGca--AG-GGUCUGGCU---ACUGC---GCG- -5'
14328 5' -55.5 NC_003521.1 + 52030 0.69 0.907429
Target:  5'- gGACUGUUguggcggggaCCCAGACgagcagcagcggcaGAUGACGCGg -3'
miRNA:   3'- aCUGGCAA----------GGGUCUGg-------------CUACUGCGCg -5'
14328 5' -55.5 NC_003521.1 + 53172 0.68 0.926744
Target:  5'- cGGCCG--CCCucGCCGAUGaagauggccagcgGCGCGCg -3'
miRNA:   3'- aCUGGCaaGGGucUGGCUAC-------------UGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 53379 0.66 0.975355
Target:  5'- aGACCGagCaggagCAGGCCGcggcgagcaggggAUGGCGCGUc -3'
miRNA:   3'- aCUGGCaaGg----GUCUGGC-------------UACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 54107 0.67 0.964409
Target:  5'- aGGUCGUUCuCCAGACCGGagccgucGuCGUGCa -3'
miRNA:   3'- aCUGGCAAG-GGUCUGGCUa------CuGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 54670 0.68 0.935147
Target:  5'- cUGGCCGUgcaCgCAGGCCGAgcugaacuccauguUGaaaucggGCGCGCa -3'
miRNA:   3'- -ACUGGCAa--GgGUCUGGCU--------------AC-------UGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 56441 0.7 0.857965
Target:  5'- aGGCCGccucguggCCCAGGuCCGA-GAgGCGCc -3'
miRNA:   3'- aCUGGCaa------GGGUCU-GGCUaCUgCGCG- -5'
14328 5' -55.5 NC_003521.1 + 56614 0.67 0.953948
Target:  5'- aUGGCCGccacgUCCCAGAgguccaCGAaGAaGCGCa -3'
miRNA:   3'- -ACUGGCa----AGGGUCUg-----GCUaCUgCGCG- -5'
14328 5' -55.5 NC_003521.1 + 56794 0.67 0.957642
Target:  5'- aUGGCCG--CCCA-ACCGgcGuCGCGCg -3'
miRNA:   3'- -ACUGGCaaGGGUcUGGCuaCuGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 57354 0.74 0.680794
Target:  5'- cUGAagcugCCCAGACCGccgccGUGACGCGCc -3'
miRNA:   3'- -ACUggcaaGGGUCUGGC-----UACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 60730 0.69 0.916594
Target:  5'- -cGCCGcugcccUCCCuGGACgGgGUGACGCGCa -3'
miRNA:   3'- acUGGCa-----AGGG-UCUGgC-UACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 61904 0.69 0.89895
Target:  5'- -cGCCGUUCCCcgacguGAUgGGUGAC-CGCu -3'
miRNA:   3'- acUGGCAAGGGu-----CUGgCUACUGcGCG- -5'
14328 5' -55.5 NC_003521.1 + 65034 0.68 0.932254
Target:  5'- cUGGCCcgcGUgcagCCCcGGCUaAUGACGCGCc -3'
miRNA:   3'- -ACUGG---CAa---GGGuCUGGcUACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 65238 0.66 0.977939
Target:  5'- cUGGCCGg-CCUGGAuCCGc--GCGCGCa -3'
miRNA:   3'- -ACUGGCaaGGGUCU-GGCuacUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 66876 0.68 0.927256
Target:  5'- gUGACUGUggCCgAGACCaGUGACGaggagGCa -3'
miRNA:   3'- -ACUGGCAa-GGgUCUGGcUACUGCg----CG- -5'
14328 5' -55.5 NC_003521.1 + 69827 0.69 0.910931
Target:  5'- cGACacaGgcaCCAGAgcggcaggUCGAUGACGCGCc -3'
miRNA:   3'- aCUGg--CaagGGUCU--------GGCUACUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.