Results 21 - 32 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1434 | 5' | -59.5 | NC_001335.1 | + | 32891 | 0.69 | 0.33182 |
Target: 5'- gGAGCCGggGCCGGCUcgggcugGGCAGG-GGCg- -3' miRNA: 3'- gCUCGGC--UGGCUGA-------CCGUCUaCCGgg -5' |
|||||||
1434 | 5' | -59.5 | NC_001335.1 | + | 36699 | 0.66 | 0.494434 |
Target: 5'- gGuAGUCGACUGGCcGGCGGucGUGguuGCCCu -3' miRNA: 3'- gC-UCGGCUGGCUGaCCGUC--UAC---CGGG- -5' |
|||||||
1434 | 5' | -59.5 | NC_001335.1 | + | 38071 | 0.67 | 0.417633 |
Target: 5'- cCGAGCUGugugggcuGCCGACgguggGGCucAGcgGaGCCCa -3' miRNA: 3'- -GCUCGGC--------UGGCUGa----CCG--UCuaC-CGGG- -5' |
|||||||
1434 | 5' | -59.5 | NC_001335.1 | + | 38355 | 0.67 | 0.45516 |
Target: 5'- gCGGGCUGGCCGGCcGaGCGGAacuaaGCCg -3' miRNA: 3'- -GCUCGGCUGGCUGaC-CGUCUac---CGGg -5' |
|||||||
1434 | 5' | -59.5 | NC_001335.1 | + | 38815 | 0.66 | 0.484466 |
Target: 5'- -cGGCCGGCgGguucaGCaGGUAcucGAUGGCCCg -3' miRNA: 3'- gcUCGGCUGgC-----UGaCCGU---CUACCGGG- -5' |
|||||||
1434 | 5' | -59.5 | NC_001335.1 | + | 38942 | 0.66 | 0.514644 |
Target: 5'- -uGGUCGACCGACaGGCGcuucuucuuaccGuUGGCUCg -3' miRNA: 3'- gcUCGGCUGGCUGaCCGU------------CuACCGGG- -5' |
|||||||
1434 | 5' | -59.5 | NC_001335.1 | + | 39711 | 0.69 | 0.348551 |
Target: 5'- cCGAGCCGACUGggaacGCUacGGCaAGcgGGCUg -3' miRNA: 3'- -GCUCGGCUGGC-----UGA--CCG-UCuaCCGGg -5' |
|||||||
1434 | 5' | -59.5 | NC_001335.1 | + | 40224 | 0.67 | 0.45516 |
Target: 5'- aCGaAGCCGACCGuCUGgacccacaaGCGGAUcGaCCCg -3' miRNA: 3'- -GC-UCGGCUGGCuGAC---------CGUCUAcC-GGG- -5' |
|||||||
1434 | 5' | -59.5 | NC_001335.1 | + | 46944 | 0.77 | 0.100844 |
Target: 5'- uCGAGCUGAuggccaaguaCgGGCUGG-AGAUGGCCCa -3' miRNA: 3'- -GCUCGGCU----------GgCUGACCgUCUACCGGG- -5' |
|||||||
1434 | 5' | -59.5 | NC_001335.1 | + | 48294 | 0.67 | 0.41672 |
Target: 5'- -cGGCCGGCCGGCcgaaccacacccuUGGCGug-GGCCa -3' miRNA: 3'- gcUCGGCUGGCUG-------------ACCGUcuaCCGGg -5' |
|||||||
1434 | 5' | -59.5 | NC_001335.1 | + | 48358 | 0.67 | 0.404951 |
Target: 5'- -cGGCCGGCCGGCcgcgacaagguacGGCgcgagcgccgcaAGGUGGUCCa -3' miRNA: 3'- gcUCGGCUGGCUGa------------CCG------------UCUACCGGG- -5' |
|||||||
1434 | 5' | -59.5 | NC_001335.1 | + | 50507 | 0.76 | 0.11566 |
Target: 5'- aGAGUCGAgugaccucuaUCGACUaGGCAcGGUGGCCCc -3' miRNA: 3'- gCUCGGCU----------GGCUGA-CCGU-CUACCGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home