Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1434 | 5' | -59.5 | NC_001335.1 | + | 522 | 0.66 | 0.493433 |
Target: 5'- -cGGCCGACCGACUucgugccGGCcuAUcucgcGGCCUg -3' miRNA: 3'- gcUCGGCUGGCUGA-------CCGucUA-----CCGGG- -5' |
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1434 | 5' | -59.5 | NC_001335.1 | + | 1268 | 0.68 | 0.373479 |
Target: 5'- gGAGCCGG-CGGCggUGGCAGca-GCCCc -3' miRNA: 3'- gCUCGGCUgGCUG--ACCGUCuacCGGG- -5' |
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1434 | 5' | -59.5 | NC_001335.1 | + | 1423 | 0.75 | 0.125501 |
Target: 5'- uCGAGUCGGaggaGACUGGCAGGcuuUGGaCCCg -3' miRNA: 3'- -GCUCGGCUgg--CUGACCGUCU---ACC-GGG- -5' |
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1434 | 5' | -59.5 | NC_001335.1 | + | 2862 | 1.12 | 0.000225 |
Target: 5'- aCGAGCCGACCGACUGGCAGAUGGCCCg -3' miRNA: 3'- -GCUCGGCUGGCUGACCGUCUACCGGG- -5' |
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1434 | 5' | -59.5 | NC_001335.1 | + | 4079 | 0.71 | 0.230149 |
Target: 5'- --uGCCGACCGGCgaGGCAGccGGCg- -3' miRNA: 3'- gcuCGGCUGGCUGa-CCGUCuaCCGgg -5' |
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1434 | 5' | -59.5 | NC_001335.1 | + | 4183 | 0.69 | 0.324832 |
Target: 5'- uCGGGCCGucccCUGACguguagcucaaUGGCAGAgcGCCCg -3' miRNA: 3'- -GCUCGGCu---GGCUG-----------ACCGUCUacCGGG- -5' |
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1434 | 5' | -59.5 | NC_001335.1 | + | 4926 | 0.69 | 0.340509 |
Target: 5'- aCGAGCaucACCGGCUugaucGGCaAGGccgcUGGCCCg -3' miRNA: 3'- -GCUCGgc-UGGCUGA-----CCG-UCU----ACCGGG- -5' |
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1434 | 5' | -59.5 | NC_001335.1 | + | 5557 | 0.67 | 0.445606 |
Target: 5'- aGuGCCGgggcggcgguGCCGAgCaGGUAGAUGGUCUg -3' miRNA: 3'- gCuCGGC----------UGGCU-GaCCGUCUACCGGG- -5' |
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1434 | 5' | -59.5 | NC_001335.1 | + | 5977 | 0.69 | 0.332603 |
Target: 5'- cCGuGCgGuAUCGGCaGGCAGAccaGGCCCg -3' miRNA: 3'- -GCuCGgC-UGGCUGaCCGUCUa--CCGGG- -5' |
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1434 | 5' | -59.5 | NC_001335.1 | + | 6979 | 0.67 | 0.417633 |
Target: 5'- --cGCCGcGCCuGCuUGGCGGAacucugUGGCCCc -3' miRNA: 3'- gcuCGGC-UGGcUG-ACCGUCU------ACCGGG- -5' |
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1434 | 5' | -59.5 | NC_001335.1 | + | 7004 | 0.71 | 0.260987 |
Target: 5'- uGAGCCGGCgGAUcacgcccucgcGGUAGAuguacUGGCCCu -3' miRNA: 3'- gCUCGGCUGgCUGa----------CCGUCU-----ACCGGG- -5' |
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1434 | 5' | -59.5 | NC_001335.1 | + | 12101 | 0.66 | 0.504495 |
Target: 5'- aCGGGCCacaauCCGACcgaGGCGGAacgGGCUg -3' miRNA: 3'- -GCUCGGcu---GGCUGa--CCGUCUa--CCGGg -5' |
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1434 | 5' | -59.5 | NC_001335.1 | + | 13157 | 0.78 | 0.080807 |
Target: 5'- --cGCCGACCGugauCUGGCGG-UGGCCUu -3' miRNA: 3'- gcuCGGCUGGCu---GACCGUCuACCGGG- -5' |
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1434 | 5' | -59.5 | NC_001335.1 | + | 15063 | 0.71 | 0.260987 |
Target: 5'- uCGAGCUGaaGCCGcugcugaaGCUGGgcCAGAaGGCCCg -3' miRNA: 3'- -GCUCGGC--UGGC--------UGACC--GUCUaCCGGG- -5' |
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1434 | 5' | -59.5 | NC_001335.1 | + | 17626 | 0.67 | 0.41672 |
Target: 5'- aCGAGauccuuaCCGGCCuGCaGGCcGAUGGCCa -3' miRNA: 3'- -GCUC-------GGCUGGcUGaCCGuCUACCGGg -5' |
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1434 | 5' | -59.5 | NC_001335.1 | + | 22568 | 0.68 | 0.403159 |
Target: 5'- aGcGUCGACUGgacaaccagcagaacGCUGGCGGcGUGGCCg -3' miRNA: 3'- gCuCGGCUGGC---------------UGACCGUC-UACCGGg -5' |
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1434 | 5' | -59.5 | NC_001335.1 | + | 25852 | 0.74 | 0.147545 |
Target: 5'- gCGAGCUGGCUG-C-GGCcaacgGGGUGGCCCa -3' miRNA: 3'- -GCUCGGCUGGCuGaCCG-----UCUACCGGG- -5' |
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1434 | 5' | -59.5 | NC_001335.1 | + | 28276 | 0.66 | 0.474594 |
Target: 5'- -cGGCCGuaauGCCGuCUGGCAGuUGGaauCCg -3' miRNA: 3'- gcUCGGC----UGGCuGACCGUCuACCg--GG- -5' |
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1434 | 5' | -59.5 | NC_001335.1 | + | 32243 | 0.66 | 0.514644 |
Target: 5'- uCGAuGCCGACgaGCUGGCcGAguucgcgGGCCg -3' miRNA: 3'- -GCU-CGGCUGgcUGACCGuCUa------CCGGg -5' |
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1434 | 5' | -59.5 | NC_001335.1 | + | 32690 | 0.69 | 0.340509 |
Target: 5'- cCGcGCCGGCCaACggcGGCGGcgGUGGCCa -3' miRNA: 3'- -GCuCGGCUGGcUGa--CCGUC--UACCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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