miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1434 5' -59.5 NC_001335.1 + 4183 0.69 0.324832
Target:  5'- uCGGGCCGucccCUGACguguagcucaaUGGCAGAgcGCCCg -3'
miRNA:   3'- -GCUCGGCu---GGCUG-----------ACCGUCUacCGGG- -5'
1434 5' -59.5 NC_001335.1 + 4079 0.71 0.230149
Target:  5'- --uGCCGACCGGCgaGGCAGccGGCg- -3'
miRNA:   3'- gcuCGGCUGGCUGa-CCGUCuaCCGgg -5'
1434 5' -59.5 NC_001335.1 + 25852 0.74 0.147545
Target:  5'- gCGAGCUGGCUG-C-GGCcaacgGGGUGGCCCa -3'
miRNA:   3'- -GCUCGGCUGGCuGaCCG-----UCUACCGGG- -5'
1434 5' -59.5 NC_001335.1 + 1423 0.75 0.125501
Target:  5'- uCGAGUCGGaggaGACUGGCAGGcuuUGGaCCCg -3'
miRNA:   3'- -GCUCGGCUgg--CUGACCGUCU---ACC-GGG- -5'
1434 5' -59.5 NC_001335.1 + 2862 1.12 0.000225
Target:  5'- aCGAGCCGACCGACUGGCAGAUGGCCCg -3'
miRNA:   3'- -GCUCGGCUGGCUGACCGUCUACCGGG- -5'
1434 5' -59.5 NC_001335.1 + 48294 0.67 0.41672
Target:  5'- -cGGCCGGCCGGCcgaaccacacccuUGGCGug-GGCCa -3'
miRNA:   3'- gcUCGGCUGGCUG-------------ACCGUcuaCCGGg -5'
1434 5' -59.5 NC_001335.1 + 522 0.66 0.493433
Target:  5'- -cGGCCGACCGACUucgugccGGCcuAUcucgcGGCCUg -3'
miRNA:   3'- gcUCGGCUGGCUGA-------CCGucUA-----CCGGG- -5'
1434 5' -59.5 NC_001335.1 + 38815 0.66 0.484466
Target:  5'- -cGGCCGGCgGguucaGCaGGUAcucGAUGGCCCg -3'
miRNA:   3'- gcUCGGCUGgC-----UGaCCGU---CUACCGGG- -5'
1434 5' -59.5 NC_001335.1 + 6979 0.67 0.417633
Target:  5'- --cGCCGcGCCuGCuUGGCGGAacucugUGGCCCc -3'
miRNA:   3'- gcuCGGC-UGGcUG-ACCGUCU------ACCGGG- -5'
1434 5' -59.5 NC_001335.1 + 22568 0.68 0.403159
Target:  5'- aGcGUCGACUGgacaaccagcagaacGCUGGCGGcGUGGCCg -3'
miRNA:   3'- gCuCGGCUGGC---------------UGACCGUC-UACCGGg -5'
1434 5' -59.5 NC_001335.1 + 32891 0.69 0.33182
Target:  5'- gGAGCCGggGCCGGCUcgggcugGGCAGG-GGCg- -3'
miRNA:   3'- gCUCGGC--UGGCUGA-------CCGUCUaCCGgg -5'
1434 5' -59.5 NC_001335.1 + 36699 0.66 0.494434
Target:  5'- gGuAGUCGACUGGCcGGCGGucGUGguuGCCCu -3'
miRNA:   3'- gC-UCGGCUGGCUGaCCGUC--UAC---CGGG- -5'
1434 5' -59.5 NC_001335.1 + 1268 0.68 0.373479
Target:  5'- gGAGCCGG-CGGCggUGGCAGca-GCCCc -3'
miRNA:   3'- gCUCGGCUgGCUG--ACCGUCuacCGGG- -5'
1434 5' -59.5 NC_001335.1 + 28276 0.66 0.474594
Target:  5'- -cGGCCGuaauGCCGuCUGGCAGuUGGaauCCg -3'
miRNA:   3'- gcUCGGC----UGGCuGACCGUCuACCg--GG- -5'
1434 5' -59.5 NC_001335.1 + 38942 0.66 0.514644
Target:  5'- -uGGUCGACCGACaGGCGcuucuucuuaccGuUGGCUCg -3'
miRNA:   3'- gcUCGGCUGGCUGaCCGU------------CuACCGGG- -5'
1434 5' -59.5 NC_001335.1 + 15063 0.71 0.260987
Target:  5'- uCGAGCUGaaGCCGcugcugaaGCUGGgcCAGAaGGCCCg -3'
miRNA:   3'- -GCUCGGC--UGGC--------UGACC--GUCUaCCGGG- -5'
1434 5' -59.5 NC_001335.1 + 46944 0.77 0.100844
Target:  5'- uCGAGCUGAuggccaaguaCgGGCUGG-AGAUGGCCCa -3'
miRNA:   3'- -GCUCGGCU----------GgCUGACCgUCUACCGGG- -5'
1434 5' -59.5 NC_001335.1 + 50507 0.76 0.11566
Target:  5'- aGAGUCGAgugaccucuaUCGACUaGGCAcGGUGGCCCc -3'
miRNA:   3'- gCUCGGCU----------GGCUGA-CCGU-CUACCGGG- -5'
1434 5' -59.5 NC_001335.1 + 7004 0.71 0.260987
Target:  5'- uGAGCCGGCgGAUcacgcccucgcGGUAGAuguacUGGCCCu -3'
miRNA:   3'- gCUCGGCUGgCUGa----------CCGUCU-----ACCGGG- -5'
1434 5' -59.5 NC_001335.1 + 5977 0.69 0.332603
Target:  5'- cCGuGCgGuAUCGGCaGGCAGAccaGGCCCg -3'
miRNA:   3'- -GCuCGgC-UGGCUGaCCGUCUa--CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.