miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1434 5' -59.5 NC_001335.1 + 32243 0.66 0.514644
Target:  5'- uCGAuGCCGACgaGCUGGCcGAguucgcgGGCCg -3'
miRNA:   3'- -GCU-CGGCUGgcUGACCGuCUa------CCGGg -5'
1434 5' -59.5 NC_001335.1 + 13157 0.78 0.080807
Target:  5'- --cGCCGACCGugauCUGGCGG-UGGCCUu -3'
miRNA:   3'- gcuCGGCUGGCu---GACCGUCuACCGGG- -5'
1434 5' -59.5 NC_001335.1 + 46944 0.77 0.100844
Target:  5'- uCGAGCUGAuggccaaguaCgGGCUGG-AGAUGGCCCa -3'
miRNA:   3'- -GCUCGGCU----------GgCUGACCgUCUACCGGG- -5'
1434 5' -59.5 NC_001335.1 + 50507 0.76 0.11566
Target:  5'- aGAGUCGAgugaccucuaUCGACUaGGCAcGGUGGCCCc -3'
miRNA:   3'- gCUCGGCU----------GGCUGA-CCGU-CUACCGGG- -5'
1434 5' -59.5 NC_001335.1 + 7004 0.71 0.260987
Target:  5'- uGAGCCGGCgGAUcacgcccucgcGGUAGAuguacUGGCCCu -3'
miRNA:   3'- gCUCGGCUGgCUGa----------CCGUCU-----ACCGGG- -5'
1434 5' -59.5 NC_001335.1 + 5977 0.69 0.332603
Target:  5'- cCGuGCgGuAUCGGCaGGCAGAccaGGCCCg -3'
miRNA:   3'- -GCuCGgC-UGGCUGaCCGUCUa--CCGGG- -5'
1434 5' -59.5 NC_001335.1 + 4926 0.69 0.340509
Target:  5'- aCGAGCaucACCGGCUugaucGGCaAGGccgcUGGCCCg -3'
miRNA:   3'- -GCUCGgc-UGGCUGA-----CCG-UCU----ACCGGG- -5'
1434 5' -59.5 NC_001335.1 + 32690 0.69 0.340509
Target:  5'- cCGcGCCGGCCaACggcGGCGGcgGUGGCCa -3'
miRNA:   3'- -GCuCGGCUGGcUGa--CCGUC--UACCGGg -5'
1434 5' -59.5 NC_001335.1 + 39711 0.69 0.348551
Target:  5'- cCGAGCCGACUGggaacGCUacGGCaAGcgGGCUg -3'
miRNA:   3'- -GCUCGGCUGGC-----UGA--CCG-UCuaCCGGg -5'
1434 5' -59.5 NC_001335.1 + 48358 0.67 0.404951
Target:  5'- -cGGCCGGCCGGCcgcgacaagguacGGCgcgagcgccgcaAGGUGGUCCa -3'
miRNA:   3'- gcUCGGCUGGCUGa------------CCG------------UCUACCGGG- -5'
1434 5' -59.5 NC_001335.1 + 12101 0.66 0.504495
Target:  5'- aCGGGCCacaauCCGACcgaGGCGGAacgGGCUg -3'
miRNA:   3'- -GCUCGGcu---GGCUGa--CCGUCUa--CCGGg -5'
1434 5' -59.5 NC_001335.1 + 40224 0.67 0.45516
Target:  5'- aCGaAGCCGACCGuCUGgacccacaaGCGGAUcGaCCCg -3'
miRNA:   3'- -GC-UCGGCUGGCuGAC---------CGUCUAcC-GGG- -5'
1434 5' -59.5 NC_001335.1 + 38355 0.67 0.45516
Target:  5'- gCGGGCUGGCCGGCcGaGCGGAacuaaGCCg -3'
miRNA:   3'- -GCUCGGCUGGCUGaC-CGUCUac---CGGg -5'
1434 5' -59.5 NC_001335.1 + 5557 0.67 0.445606
Target:  5'- aGuGCCGgggcggcgguGCCGAgCaGGUAGAUGGUCUg -3'
miRNA:   3'- gCuCGGC----------UGGCU-GaCCGUCUACCGGG- -5'
1434 5' -59.5 NC_001335.1 + 38071 0.67 0.417633
Target:  5'- cCGAGCUGugugggcuGCCGACgguggGGCucAGcgGaGCCCa -3'
miRNA:   3'- -GCUCGGC--------UGGCUGa----CCG--UCuaC-CGGG- -5'
1434 5' -59.5 NC_001335.1 + 17626 0.67 0.41672
Target:  5'- aCGAGauccuuaCCGGCCuGCaGGCcGAUGGCCa -3'
miRNA:   3'- -GCUC-------GGCUGGcUGaCCGuCUACCGGg -5'
1434 5' -59.5 NC_001335.1 + 38942 0.66 0.514644
Target:  5'- -uGGUCGACCGACaGGCGcuucuucuuaccGuUGGCUCg -3'
miRNA:   3'- gcUCGGCUGGCUGaCCGU------------CuACCGGG- -5'
1434 5' -59.5 NC_001335.1 + 1423 0.75 0.125501
Target:  5'- uCGAGUCGGaggaGACUGGCAGGcuuUGGaCCCg -3'
miRNA:   3'- -GCUCGGCUgg--CUGACCGUCU---ACC-GGG- -5'
1434 5' -59.5 NC_001335.1 + 25852 0.74 0.147545
Target:  5'- gCGAGCUGGCUG-C-GGCcaacgGGGUGGCCCa -3'
miRNA:   3'- -GCUCGGCUGGCuGaCCG-----UCUACCGGG- -5'
1434 5' -59.5 NC_001335.1 + 4079 0.71 0.230149
Target:  5'- --uGCCGACCGGCgaGGCAGccGGCg- -3'
miRNA:   3'- gcuCGGCUGGCUGa-CCGUCuaCCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.