miRNA display CGI


Results 61 - 80 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14340 3' -60.9 NC_003521.1 + 186534 0.66 0.782018
Target:  5'- cAGCGGGggcuccGUGGGAggCAG-GGCCGGCa -3'
miRNA:   3'- -UCGUCU------CGCCCUagGUCgCUGGCCGg -5'
14340 3' -60.9 NC_003521.1 + 87146 0.66 0.782018
Target:  5'- aGGUguuGGAGCGGGcgcaguUCguGCG-CgCGGCCg -3'
miRNA:   3'- -UCG---UCUCGCCCu-----AGguCGCuG-GCCGG- -5'
14340 3' -60.9 NC_003521.1 + 166217 0.66 0.782018
Target:  5'- uGGCGcGGCGGcGA---GGCGcGCCGGCCg -3'
miRNA:   3'- -UCGUcUCGCC-CUaggUCGC-UGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 116680 0.66 0.782018
Target:  5'- cGGCAGcGGCGgcGGAggCAGCGGCgCGGgCg -3'
miRNA:   3'- -UCGUC-UCGC--CCUagGUCGCUG-GCCgG- -5'
14340 3' -60.9 NC_003521.1 + 29444 0.66 0.782018
Target:  5'- cAGCGc-GUGGGccaguucaugAUCC-GCGACCGGCUg -3'
miRNA:   3'- -UCGUcuCGCCC----------UAGGuCGCUGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 148377 0.66 0.782018
Target:  5'- aAGCcGAGCGGGGUgCGGgGA--GGCUg -3'
miRNA:   3'- -UCGuCUCGCCCUAgGUCgCUggCCGG- -5'
14340 3' -60.9 NC_003521.1 + 137208 0.67 0.776793
Target:  5'- cGGCGGc-CGGGAcgcccuucuuucagaUCCcccGCGcACCGGCCg -3'
miRNA:   3'- -UCGUCucGCCCU---------------AGGu--CGC-UGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 34497 0.67 0.773287
Target:  5'- aAGCAGAGCaGcGAgcgCaggUAGCGGCCgcgGGCCg -3'
miRNA:   3'- -UCGUCUCGcC-CUa--G---GUCGCUGG---CCGG- -5'
14340 3' -60.9 NC_003521.1 + 119754 0.67 0.773287
Target:  5'- uGCGGcAGCuGGAguaCCAGCacaccuggGACCGGCg -3'
miRNA:   3'- uCGUC-UCGcCCUa--GGUCG--------CUGGCCGg -5'
14340 3' -60.9 NC_003521.1 + 210600 0.67 0.773287
Target:  5'- uGCAGcGCGacg-CCAaCGGCCGGCCg -3'
miRNA:   3'- uCGUCuCGCccuaGGUcGCUGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 52622 0.67 0.773287
Target:  5'- uGGCAGGacCGGGugAUCCuGCG-UCGGCCc -3'
miRNA:   3'- -UCGUCUc-GCCC--UAGGuCGCuGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 121623 0.67 0.772407
Target:  5'- gGGCaAGAccgagaagaucaaGCGGccccaGAUCCAGCugcgcGCCGGCCu -3'
miRNA:   3'- -UCG-UCU-------------CGCC-----CUAGGUCGc----UGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 167046 0.67 0.771527
Target:  5'- gGGCAGcGGCGuGGcgcucaugacgCCGGUG-CCGGCCc -3'
miRNA:   3'- -UCGUC-UCGC-CCua---------GGUCGCuGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 126714 0.67 0.764444
Target:  5'- cGguGAGCa-GAUCCgaGGCGGCgCGGUCg -3'
miRNA:   3'- uCguCUCGccCUAGG--UCGCUG-GCCGG- -5'
14340 3' -60.9 NC_003521.1 + 19456 0.67 0.764444
Target:  5'- aGGCGcGGCGGGA-CCAugucGCuGCgCGGCCa -3'
miRNA:   3'- -UCGUcUCGCCCUaGGU----CGcUG-GCCGG- -5'
14340 3' -60.9 NC_003521.1 + 117613 0.67 0.764444
Target:  5'- cGC--AGCGaGGGUcCCAGCGAcCCGGUg -3'
miRNA:   3'- uCGucUCGC-CCUA-GGUCGCU-GGCCGg -5'
14340 3' -60.9 NC_003521.1 + 196963 0.67 0.764444
Target:  5'- cGGCccgGGAGCcggccgGGGcgCCuGUGACgGGCCc -3'
miRNA:   3'- -UCG---UCUCG------CCCuaGGuCGCUGgCCGG- -5'
14340 3' -60.9 NC_003521.1 + 20908 0.67 0.764444
Target:  5'- --aGGAGCaGGuccCCGGgGACCGGUCu -3'
miRNA:   3'- ucgUCUCGcCCua-GGUCgCUGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 30991 0.67 0.764444
Target:  5'- uGCGGAuCGGGAUggGGCGACgaCGGCg -3'
miRNA:   3'- uCGUCUcGCCCUAggUCGCUG--GCCGg -5'
14340 3' -60.9 NC_003521.1 + 70246 0.67 0.764444
Target:  5'- aGGCAGGGCgagcugguGGGGUgCAGC-ACgGGCa -3'
miRNA:   3'- -UCGUCUCG--------CCCUAgGUCGcUGgCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.