miRNA display CGI


Results 41 - 60 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14340 3' -60.9 NC_003521.1 + 238472 0.66 0.805811
Target:  5'- gGGCGGGGCGgagacgcggcccaGGGUCagCAGCcccaggaGGCCGGCg -3'
miRNA:   3'- -UCGUCUCGC-------------CCUAG--GUCG-------CUGGCCGg -5'
14340 3' -60.9 NC_003521.1 + 38244 0.66 0.805811
Target:  5'- gGGCGGGGCGgagacgcggcccaGGGUCagCAGCcccaggaGGCCGGCg -3'
miRNA:   3'- -UCGUCUCGC-------------CCUAG--GUCG-------CUGGCCGg -5'
14340 3' -60.9 NC_003521.1 + 162309 0.66 0.802475
Target:  5'- gGGgAGAGCGGGGggauUCCcuacuacccgcaggcGGCGACUgcgGGCg -3'
miRNA:   3'- -UCgUCUCGCCCU----AGG---------------UCGCUGG---CCGg -5'
14340 3' -60.9 NC_003521.1 + 132400 0.66 0.801637
Target:  5'- cAGaCGGGGCGGGGUCCcugcaauggcaagAcacggggucggguuaGCGugCGGCg -3'
miRNA:   3'- -UC-GUCUCGCCCUAGG-------------U---------------CGCugGCCGg -5'
14340 3' -60.9 NC_003521.1 + 222118 0.66 0.799117
Target:  5'- cGGCAGccacAGCcGGAUC--GCG-CCGGCCa -3'
miRNA:   3'- -UCGUC----UCGcCCUAGguCGCuGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 125318 0.66 0.799117
Target:  5'- cGCGGcGGUGGG-UCCggccacagAGCGACacgCGGCCc -3'
miRNA:   3'- uCGUC-UCGCCCuAGG--------UCGCUG---GCCGG- -5'
14340 3' -60.9 NC_003521.1 + 76363 0.66 0.799117
Target:  5'- cGGCGGcAGCGGcGA-CCGuGaCGGCCgcGGCCg -3'
miRNA:   3'- -UCGUC-UCGCC-CUaGGU-C-GCUGG--CCGG- -5'
14340 3' -60.9 NC_003521.1 + 84429 0.66 0.799117
Target:  5'- cGGCAGGGUGGcGAagCGGCccUCGGUCa -3'
miRNA:   3'- -UCGUCUCGCC-CUagGUCGcuGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 77241 0.66 0.799117
Target:  5'- uGUAGAcgucgGCGGGGUCCAcgggguacucGCcGCCGGgCa -3'
miRNA:   3'- uCGUCU-----CGCCCUAGGU----------CGcUGGCCgG- -5'
14340 3' -60.9 NC_003521.1 + 136692 0.66 0.799117
Target:  5'- gAGCAGGGCGGGccCgAGCagGACgCcGCCg -3'
miRNA:   3'- -UCGUCUCGCCCuaGgUCG--CUG-GcCGG- -5'
14340 3' -60.9 NC_003521.1 + 170694 0.66 0.796585
Target:  5'- cGCAGcucgaggcccugauAGCGGcccUUCGGCGgcacGCCGGCCa -3'
miRNA:   3'- uCGUC--------------UCGCCcu-AGGUCGC----UGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 147664 0.66 0.79063
Target:  5'- cGGUAGAGgGacGUCgAGCGA-CGGCCg -3'
miRNA:   3'- -UCGUCUCgCccUAGgUCGCUgGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 83703 0.66 0.79063
Target:  5'- cGCGcGAGCGGGcGUCCaAGgGGuCCagGGCCu -3'
miRNA:   3'- uCGU-CUCGCCC-UAGG-UCgCU-GG--CCGG- -5'
14340 3' -60.9 NC_003521.1 + 131086 0.66 0.79063
Target:  5'- cGCGGcucgcGCGGGcUCCggacggcggGGCGGCgCGGCUg -3'
miRNA:   3'- uCGUCu----CGCCCuAGG---------UCGCUG-GCCGG- -5'
14340 3' -60.9 NC_003521.1 + 172086 0.66 0.79063
Target:  5'- cAGCGGcGGCGuGAugaagUCCGuGCGGgCGGCCg -3'
miRNA:   3'- -UCGUC-UCGCcCU-----AGGU-CGCUgGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 4545 0.66 0.79063
Target:  5'- cGCAGGGUccccgGGGAgucacuacggCCGGgGcacacGCCGGCCu -3'
miRNA:   3'- uCGUCUCG-----CCCUa---------GGUCgC-----UGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 148505 0.66 0.79063
Target:  5'- gGGCGGA-UGGGAUCCGG-GACgGGg- -3'
miRNA:   3'- -UCGUCUcGCCCUAGGUCgCUGgCCgg -5'
14340 3' -60.9 NC_003521.1 + 155332 0.66 0.79063
Target:  5'- cGCGGgucccGGCGGGGgcgCgGGC-ACCGGCa -3'
miRNA:   3'- uCGUC-----UCGCCCUa--GgUCGcUGGCCGg -5'
14340 3' -60.9 NC_003521.1 + 155111 0.66 0.788918
Target:  5'- gAGCAGGGCGuGGAggacuucUCCcuggagaaccugcGGCGcgugcuggacGCCGGCUc -3'
miRNA:   3'- -UCGUCUCGC-CCU-------AGG-------------UCGC----------UGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 42544 0.66 0.785477
Target:  5'- cAGCGGuccuccgcgacgcccGGCuGGcuGUCCGGCGGCCGaGUCu -3'
miRNA:   3'- -UCGUC---------------UCGcCC--UAGGUCGCUGGC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.