miRNA display CGI


Results 21 - 40 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14340 3' -60.9 NC_003521.1 + 74633 0.66 0.822951
Target:  5'- cAGCGGGguggugcGCGGGAcCCuggAGCGccGCuCGGCCc -3'
miRNA:   3'- -UCGUCU-------CGCCCUaGG---UCGC--UG-GCCGG- -5'
14340 3' -60.9 NC_003521.1 + 126099 0.66 0.821347
Target:  5'- cGGC-GuGCcGGAUCCAGCGgucgaucucgucguGCCGGUa -3'
miRNA:   3'- -UCGuCuCGcCCUAGGUCGC--------------UGGCCGg -5'
14340 3' -60.9 NC_003521.1 + 34986 0.66 0.818929
Target:  5'- cGCAGAaggucucCGGGG-CCAGCGAgcgcuugcgucgugcCCGGCg -3'
miRNA:   3'- uCGUCUc------GCCCUaGGUCGCU---------------GGCCGg -5'
14340 3' -60.9 NC_003521.1 + 195169 0.66 0.818929
Target:  5'- uAGCGGGugugcgccggaccccGCGGag-CCGGCGGCggUGGCCg -3'
miRNA:   3'- -UCGUCU---------------CGCCcuaGGUCGCUG--GCCGG- -5'
14340 3' -60.9 NC_003521.1 + 204897 0.66 0.815684
Target:  5'- cGCGcGGCGGGA--CGGUGGCC-GCCg -3'
miRNA:   3'- uCGUcUCGCCCUagGUCGCUGGcCGG- -5'
14340 3' -60.9 NC_003521.1 + 173639 0.66 0.815684
Target:  5'- gAGCAGGGUGuuGGuUCgGGCGGCUGcGCg -3'
miRNA:   3'- -UCGUCUCGC--CCuAGgUCGCUGGC-CGg -5'
14340 3' -60.9 NC_003521.1 + 70951 0.66 0.815684
Target:  5'- gAGCGGAGCGGc-UCCGGaCGgaGCCacGCCg -3'
miRNA:   3'- -UCGUCUCGCCcuAGGUC-GC--UGGc-CGG- -5'
14340 3' -60.9 NC_003521.1 + 89736 0.66 0.815684
Target:  5'- gGGCacgGGGGCGGuGAcggCAGcCGGCgCGGCCg -3'
miRNA:   3'- -UCG---UCUCGCC-CUag-GUC-GCUG-GCCGG- -5'
14340 3' -60.9 NC_003521.1 + 197178 0.66 0.815684
Target:  5'- uGGCAGGGCuGGAggCGGUGG-CGGUCc -3'
miRNA:   3'- -UCGUCUCGcCCUagGUCGCUgGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 36412 0.66 0.815684
Target:  5'- cGCGGGGCGuGGAUUucgCGGuCGGagGGCCg -3'
miRNA:   3'- uCGUCUCGC-CCUAG---GUC-GCUggCCGG- -5'
14340 3' -60.9 NC_003521.1 + 102889 0.66 0.815684
Target:  5'- gGGCuccucGGGCaGGGAaCC-GCGACCcGCCa -3'
miRNA:   3'- -UCGu----CUCG-CCCUaGGuCGCUGGcCGG- -5'
14340 3' -60.9 NC_003521.1 + 109872 0.66 0.814869
Target:  5'- gGGCGGcGGCGGGG-CCAccaguaacugcguGCGACCucgaccGCCg -3'
miRNA:   3'- -UCGUC-UCGCCCUaGGU-------------CGCUGGc-----CGG- -5'
14340 3' -60.9 NC_003521.1 + 239353 0.66 0.810773
Target:  5'- gGGCGucugcAGCGGGAUgcccgugugcugccaCCGGCGGCgcagcucgCGGCCc -3'
miRNA:   3'- -UCGUc----UCGCCCUA---------------GGUCGCUG--------GCCGG- -5'
14340 3' -60.9 NC_003521.1 + 39125 0.66 0.810773
Target:  5'- gGGCGucuGcAGCGGGAUgcccgugugcugccaCCGGCGGCgcagcucgCGGCCc -3'
miRNA:   3'- -UCGU---C-UCGCCCUA---------------GGUCGCUG--------GCCGG- -5'
14340 3' -60.9 NC_003521.1 + 106595 0.66 0.80747
Target:  5'- gGGCGGcGCGGG---CAGCuACuCGGCCa -3'
miRNA:   3'- -UCGUCuCGCCCuagGUCGcUG-GCCGG- -5'
14340 3' -60.9 NC_003521.1 + 114034 0.66 0.80747
Target:  5'- cGCGGAGCuGGA-CCAcGCGcagcGCCagGGCCu -3'
miRNA:   3'- uCGUCUCGcCCUaGGU-CGC----UGG--CCGG- -5'
14340 3' -60.9 NC_003521.1 + 64833 0.66 0.80747
Target:  5'- -cCGGGGCuaacagGGGAUCUccacGGCGAucucggguaccCCGGCCa -3'
miRNA:   3'- ucGUCUCG------CCCUAGG----UCGCU-----------GGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 13910 0.66 0.80747
Target:  5'- cGCGGAGgGGGccgcggaggCC-GCG-CUGGCCg -3'
miRNA:   3'- uCGUCUCgCCCua-------GGuCGCuGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 115386 0.66 0.80747
Target:  5'- cGGCAuGuGCaGGGcgCgGGCGGCCgccacGGCCu -3'
miRNA:   3'- -UCGU-CuCG-CCCuaGgUCGCUGG-----CCGG- -5'
14340 3' -60.9 NC_003521.1 + 130087 0.66 0.80747
Target:  5'- uGGCcGAGUGGaacugCCAGCuGCCgGGCCu -3'
miRNA:   3'- -UCGuCUCGCCcua--GGUCGcUGG-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.