miRNA display CGI


Results 21 - 40 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14340 3' -60.9 NC_003521.1 + 207339 0.72 0.448377
Target:  5'- cGgGGGGCGcgucccucGGGUCgGcGCGGCCGGCCg -3'
miRNA:   3'- uCgUCUCGC--------CCUAGgU-CGCUGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 123570 0.72 0.471841
Target:  5'- cGGCGGuGGCGGGAUggCGGCGGCgccgggagccgccgCGGCCg -3'
miRNA:   3'- -UCGUC-UCGCCCUAg-GUCGCUG--------------GCCGG- -5'
14340 3' -60.9 NC_003521.1 + 226884 0.72 0.474487
Target:  5'- gGGCAGcuGCGGGGgcaccaCGGCGGCCagcgcGGCCu -3'
miRNA:   3'- -UCGUCu-CGCCCUag----GUCGCUGG-----CCGG- -5'
14340 3' -60.9 NC_003521.1 + 138666 0.72 0.474487
Target:  5'- gAGaCGGGGCGGuGAgccucaCCGGCGACaaGGCCg -3'
miRNA:   3'- -UC-GUCUCGCC-CUa-----GGUCGCUGg-CCGG- -5'
14340 3' -60.9 NC_003521.1 + 182979 0.72 0.483359
Target:  5'- uAGCAGcGaCGGcGUUCGGCGucACCGGCCg -3'
miRNA:   3'- -UCGUCuC-GCCcUAGGUCGC--UGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 193274 0.72 0.483359
Target:  5'- uGCGGAGCGGGugCCGG-GACgGGCg -3'
miRNA:   3'- uCGUCUCGCCCuaGGUCgCUGgCCGg -5'
14340 3' -60.9 NC_003521.1 + 216874 0.72 0.483359
Target:  5'- cGUGGAGCGGGAcaUCCAgGCcauCCaGGCCa -3'
miRNA:   3'- uCGUCUCGCCCU--AGGU-CGcu-GG-CCGG- -5'
14340 3' -60.9 NC_003521.1 + 175572 0.72 0.490513
Target:  5'- uAGCAGuuccucuugcgcGCGcGGAUCCAG--GCCGGCCa -3'
miRNA:   3'- -UCGUCu-----------CGC-CCUAGGUCgcUGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 45649 0.72 0.492309
Target:  5'- cGGCuccGCGGGGUCCGGCGcacACCcgcuaucaggGGCCg -3'
miRNA:   3'- -UCGucuCGCCCUAGGUCGC---UGG----------CCGG- -5'
14340 3' -60.9 NC_003521.1 + 162849 0.71 0.501335
Target:  5'- uGCAGAaCGGcGAgCCcGCGGCCGGCUc -3'
miRNA:   3'- uCGUCUcGCC-CUaGGuCGCUGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 170874 0.71 0.501335
Target:  5'- gGGCGGGcGCGGGugGUCaGGCGuCCGGCg -3'
miRNA:   3'- -UCGUCU-CGCCC--UAGgUCGCuGGCCGg -5'
14340 3' -60.9 NC_003521.1 + 184168 0.71 0.510433
Target:  5'- uGCGcGAGCGGGA---GGUGcACCGGCCc -3'
miRNA:   3'- uCGU-CUCGCCCUaggUCGC-UGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 5823 0.71 0.510433
Target:  5'- gGGUGGuGCcGGGUcCCGGCGACCggGGCCc -3'
miRNA:   3'- -UCGUCuCGcCCUA-GGUCGCUGG--CCGG- -5'
14340 3' -60.9 NC_003521.1 + 215438 0.71 0.510433
Target:  5'- aAGCAGAGcCGcGGGUgCUGGCG-CCaGGCCg -3'
miRNA:   3'- -UCGUCUC-GC-CCUA-GGUCGCuGG-CCGG- -5'
14340 3' -60.9 NC_003521.1 + 123458 0.71 0.510433
Target:  5'- uAGCGGGgaccGCGGGu--UGGCGACUGGCCc -3'
miRNA:   3'- -UCGUCU----CGCCCuagGUCGCUGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 122225 0.71 0.510433
Target:  5'- uGC-GAGCGcGGGUgCCGGCGACUGagcGCCg -3'
miRNA:   3'- uCGuCUCGC-CCUA-GGUCGCUGGC---CGG- -5'
14340 3' -60.9 NC_003521.1 + 154288 0.71 0.5196
Target:  5'- cGUGGAGCGGGGcggCaCGGCGuCCggGGCCg -3'
miRNA:   3'- uCGUCUCGCCCUa--G-GUCGCuGG--CCGG- -5'
14340 3' -60.9 NC_003521.1 + 217653 0.71 0.52883
Target:  5'- gGGCAuGGCGGGAUCCGGgGguuuccACgGGCg -3'
miRNA:   3'- -UCGUcUCGCCCUAGGUCgC------UGgCCGg -5'
14340 3' -60.9 NC_003521.1 + 99306 0.71 0.52883
Target:  5'- cGCAGAGCaGGcaGGUCCGGgacgaGGCgGGCCa -3'
miRNA:   3'- uCGUCUCG-CC--CUAGGUCg----CUGgCCGG- -5'
14340 3' -60.9 NC_003521.1 + 125020 0.71 0.547466
Target:  5'- cAGCAGGcugcgcauccGCGGGuAUCCGcGCGugUGGUCc -3'
miRNA:   3'- -UCGUCU----------CGCCC-UAGGU-CGCugGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.