miRNA display CGI


Results 1 - 20 of 234 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14340 3' -60.9 NC_003521.1 + 33658 1.11 0.001218
Target:  5'- cAGCAGAGCGGGAUCCAGCGACCGGCCg -3'
miRNA:   3'- -UCGUCUCGCCCUAGGUCGCUGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 137270 0.84 0.093458
Target:  5'- gGGCAGAGCGGGGgccCCAGCGACCuggaGCUg -3'
miRNA:   3'- -UCGUCUCGCCCUa--GGUCGCUGGc---CGG- -5'
14340 3' -60.9 NC_003521.1 + 155567 0.79 0.192851
Target:  5'- cGCGGAGCGGGuagCCAguuauuuGCGcGCCGGCCc -3'
miRNA:   3'- uCGUCUCGCCCua-GGU-------CGC-UGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 74587 0.77 0.23794
Target:  5'- cGGCGGcGCGGcGUCCcGCGGCCGGCg -3'
miRNA:   3'- -UCGUCuCGCCcUAGGuCGCUGGCCGg -5'
14340 3' -60.9 NC_003521.1 + 113842 0.77 0.248964
Target:  5'- cAGCGGcAGCGGGGcggCCGGCGACgaCGGCg -3'
miRNA:   3'- -UCGUC-UCGCCCUa--GGUCGCUG--GCCGg -5'
14340 3' -60.9 NC_003521.1 + 184965 0.77 0.258664
Target:  5'- cGGCGGuGCGGG--CCAGCGuggaccugugcaagGCCGGCCu -3'
miRNA:   3'- -UCGUCuCGCCCuaGGUCGC--------------UGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 207952 0.76 0.284574
Target:  5'- cGGCGGcGCGGGcgCCAaacCGAUCGGCCu -3'
miRNA:   3'- -UCGUCuCGCCCuaGGUc--GCUGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 128396 0.76 0.297307
Target:  5'- gGGCcgccuGAGCGGGcgucgGUCCgaaaGGCGGCCGGUCg -3'
miRNA:   3'- -UCGu----CUCGCCC-----UAGG----UCGCUGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 76507 0.76 0.297307
Target:  5'- cGGcCAGAGCGGGA-CCGcGCGACaccagGGCCu -3'
miRNA:   3'- -UC-GUCUCGCCCUaGGU-CGCUGg----CCGG- -5'
14340 3' -60.9 NC_003521.1 + 174480 0.75 0.316548
Target:  5'- cGC-GAGCGGGAUCCAGUuGCugccaggCGGCCu -3'
miRNA:   3'- uCGuCUCGCCCUAGGUCGcUG-------GCCGG- -5'
14340 3' -60.9 NC_003521.1 + 129218 0.75 0.345326
Target:  5'- cGCGuGGUGGGcaGUCCGGCGccGCUGGCCa -3'
miRNA:   3'- uCGUcUCGCCC--UAGGUCGC--UGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 181452 0.74 0.360031
Target:  5'- uGCuGcGCGGcGUCCAGCGGCUGGCg -3'
miRNA:   3'- uCGuCuCGCCcUAGGUCGCUGGCCGg -5'
14340 3' -60.9 NC_003521.1 + 120224 0.74 0.367545
Target:  5'- cGCAGAcgcuaccgGCaGGAgCCGGCGGCCGcGCCg -3'
miRNA:   3'- uCGUCU--------CGcCCUaGGUCGCUGGC-CGG- -5'
14340 3' -60.9 NC_003521.1 + 124202 0.74 0.367545
Target:  5'- gGGguGAGCGGGcccuuucuggCCcGCGACCgGGCCc -3'
miRNA:   3'- -UCguCUCGCCCua--------GGuCGCUGG-CCGG- -5'
14340 3' -60.9 NC_003521.1 + 71274 0.74 0.375167
Target:  5'- cGGCGGAgGCGGGggCC-GCGGCacgGGCCc -3'
miRNA:   3'- -UCGUCU-CGCCCuaGGuCGCUGg--CCGG- -5'
14340 3' -60.9 NC_003521.1 + 216737 0.74 0.382895
Target:  5'- uGGCGGAGagGGGAUgaGGCGACgGGCUc -3'
miRNA:   3'- -UCGUCUCg-CCCUAggUCGCUGgCCGG- -5'
14340 3' -60.9 NC_003521.1 + 36685 0.74 0.390728
Target:  5'- gAGCuGAGgcCGGGcUCCGGCGcCUGGCCc -3'
miRNA:   3'- -UCGuCUC--GCCCuAGGUCGCuGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 164826 0.74 0.390728
Target:  5'- cGCGGGG-GaGGAggaaCCGGCGGCCGGCg -3'
miRNA:   3'- uCGUCUCgC-CCUa---GGUCGCUGGCCGg -5'
14340 3' -60.9 NC_003521.1 + 166172 0.73 0.423083
Target:  5'- cAGCAGAGgGGGGUUCAGCccguGACgcaGGCa -3'
miRNA:   3'- -UCGUCUCgCCCUAGGUCG----CUGg--CCGg -5'
14340 3' -60.9 NC_003521.1 + 44353 0.73 0.426406
Target:  5'- aGGCGGAaCGGGccgagugCCAGCGgagguucgcgcggcaGCCGGCCg -3'
miRNA:   3'- -UCGUCUcGCCCua-----GGUCGC---------------UGGCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.