miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14340 3' -60.9 NC_003521.1 + 71 0.68 0.718832
Target:  5'- cGC--GGCGGcGUgCGGCgGGCCGGCCg -3'
miRNA:   3'- uCGucUCGCCcUAgGUCG-CUGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 4124 0.66 0.823751
Target:  5'- -aUAGGGUGGGAUacgggAGCgGGCCGGCg -3'
miRNA:   3'- ucGUCUCGCCCUAgg---UCG-CUGGCCGg -5'
14340 3' -60.9 NC_003521.1 + 4545 0.66 0.79063
Target:  5'- cGCAGGGUccccgGGGAgucacuacggCCGGgGcacacGCCGGCCu -3'
miRNA:   3'- uCGUCUCG-----CCCUa---------GGUCgC-----UGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 5303 0.67 0.737326
Target:  5'- cGGCAuGuuucGCGGGGg-CGGCGugccccGCCGGCCg -3'
miRNA:   3'- -UCGU-Cu---CGCCCUagGUCGC------UGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 5823 0.71 0.510433
Target:  5'- gGGUGGuGCcGGGUcCCGGCGACCggGGCCc -3'
miRNA:   3'- -UCGUCuCGcCCUA-GGUCGCUGG--CCGG- -5'
14340 3' -60.9 NC_003521.1 + 6384 0.67 0.734571
Target:  5'- cGCGGAG-GGGcgCCgcagcuaccgcggcGGCGACgGGUCu -3'
miRNA:   3'- uCGUCUCgCCCuaGG--------------UCGCUGgCCGG- -5'
14340 3' -60.9 NC_003521.1 + 13910 0.66 0.80747
Target:  5'- cGCGGAGgGGGccgcggaggCC-GCG-CUGGCCg -3'
miRNA:   3'- uCGUCUCgCCCua-------GGuCGCuGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 15318 0.67 0.737326
Target:  5'- cGGCGccGAGCGGGugaUCAGCGcGCUGGUg -3'
miRNA:   3'- -UCGU--CUCGCCCua-GGUCGC-UGGCCGg -5'
14340 3' -60.9 NC_003521.1 + 16707 0.69 0.623618
Target:  5'- uGGCAGAcgcgcgugaugcGCGGcGAgUUCGGCGACC-GCCg -3'
miRNA:   3'- -UCGUCU------------CGCC-CU-AGGUCGCUGGcCGG- -5'
14340 3' -60.9 NC_003521.1 + 19456 0.67 0.764444
Target:  5'- aGGCGcGGCGGGA-CCAugucGCuGCgCGGCCa -3'
miRNA:   3'- -UCGUcUCGCCCUaGGU----CGcUG-GCCGG- -5'
14340 3' -60.9 NC_003521.1 + 19541 0.66 0.823751
Target:  5'- uGCAGAGCcuGAUCCugaugagcGUGugCGGCUu -3'
miRNA:   3'- uCGUCUCGccCUAGGu-------CGCugGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 20908 0.67 0.764444
Target:  5'- --aGGAGCaGGuccCCGGgGACCGGUCu -3'
miRNA:   3'- ucgUCUCGcCCua-GGUCgCUGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 22169 0.69 0.623618
Target:  5'- cGGUGGAGaGGGAcgaGGCGccGCCGGCCg -3'
miRNA:   3'- -UCGUCUCgCCCUaggUCGC--UGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 24221 0.69 0.614015
Target:  5'- cAGCAGcaccAGCGGGuugggCAGCGGgCGGUCg -3'
miRNA:   3'- -UCGUC----UCGCCCuag--GUCGCUgGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 25311 0.68 0.700076
Target:  5'- -aCGGGGCGGucgucuUCCAgGUGGCCGGCa -3'
miRNA:   3'- ucGUCUCGCCcu----AGGU-CGCUGGCCGg -5'
14340 3' -60.9 NC_003521.1 + 25645 0.66 0.823751
Target:  5'- uAGCGGAGCauaccguguguGGcGAacUCCAGCaGGuugUCGGCCa -3'
miRNA:   3'- -UCGUCUCG-----------CC-CU--AGGUCG-CU---GGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 27769 0.68 0.7179
Target:  5'- cGCcGAGCGcGGAggaagaaaccuacUCCGGCccgcucGGCCGGCUc -3'
miRNA:   3'- uCGuCUCGC-CCU-------------AGGUCG------CUGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 29444 0.66 0.782018
Target:  5'- cAGCGc-GUGGGccaguucaugAUCC-GCGACCGGCUg -3'
miRNA:   3'- -UCGUcuCGCCC----------UAGGuCGCUGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 30991 0.67 0.764444
Target:  5'- uGCGGAuCGGGAUggGGCGACgaCGGCg -3'
miRNA:   3'- uCGUCUcGCCCUAggUCGCUG--GCCGg -5'
14340 3' -60.9 NC_003521.1 + 33658 1.11 0.001218
Target:  5'- cAGCAGAGCGGGAUCCAGCGACCGGCCg -3'
miRNA:   3'- -UCGUCUCGCCCUAGGUCGCUGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.