miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14340 3' -60.9 NC_003521.1 + 197178 0.66 0.815684
Target:  5'- uGGCAGGGCuGGAggCGGUGG-CGGUCc -3'
miRNA:   3'- -UCGUCUCGcCCUagGUCGCUgGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 103600 0.66 0.831664
Target:  5'- cGguGcGCGGGGgaUCUgaaagaagGGCGucCCGGCCg -3'
miRNA:   3'- uCguCuCGCCCU--AGG--------UCGCu-GGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 74633 0.66 0.822951
Target:  5'- cAGCGGGguggugcGCGGGAcCCuggAGCGccGCuCGGCCc -3'
miRNA:   3'- -UCGUCU-------CGCCCUaGG---UCGC--UG-GCCGG- -5'
14340 3' -60.9 NC_003521.1 + 136692 0.66 0.799117
Target:  5'- gAGCAGGGCGGGccCgAGCagGACgCcGCCg -3'
miRNA:   3'- -UCGUCUCGCCCuaGgUCG--CUG-GcCGG- -5'
14340 3' -60.9 NC_003521.1 + 34986 0.66 0.818929
Target:  5'- cGCAGAaggucucCGGGG-CCAGCGAgcgcuugcgucgugcCCGGCg -3'
miRNA:   3'- uCGUCUc------GCCCUaGGUCGCU---------------GGCCGg -5'
14340 3' -60.9 NC_003521.1 + 83703 0.66 0.79063
Target:  5'- cGCGcGAGCGGGcGUCCaAGgGGuCCagGGCCu -3'
miRNA:   3'- uCGU-CUCGCCC-UAGG-UCgCU-GG--CCGG- -5'
14340 3' -60.9 NC_003521.1 + 239353 0.66 0.810773
Target:  5'- gGGCGucugcAGCGGGAUgcccgugugcugccaCCGGCGGCgcagcucgCGGCCc -3'
miRNA:   3'- -UCGUc----UCGCCCUA---------------GGUCGCUG--------GCCGG- -5'
14340 3' -60.9 NC_003521.1 + 130087 0.66 0.80747
Target:  5'- uGGCcGAGUGGaacugCCAGCuGCCgGGCCu -3'
miRNA:   3'- -UCGuCUCGCCcua--GGUCGcUGG-CCGG- -5'
14340 3' -60.9 NC_003521.1 + 29444 0.66 0.782018
Target:  5'- cAGCGc-GUGGGccaguucaugAUCC-GCGACCGGCUg -3'
miRNA:   3'- -UCGUcuCGCCC----------UAGGuCGCUGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 4545 0.66 0.79063
Target:  5'- cGCAGGGUccccgGGGAgucacuacggCCGGgGcacacGCCGGCCu -3'
miRNA:   3'- uCGUCUCG-----CCCUa---------GGUCgC-----UGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 25645 0.66 0.823751
Target:  5'- uAGCGGAGCauaccguguguGGcGAacUCCAGCaGGuugUCGGCCa -3'
miRNA:   3'- -UCGUCUCG-----------CC-CU--AGGUCG-CU---GGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 77241 0.66 0.799117
Target:  5'- uGUAGAcgucgGCGGGGUCCAcgggguacucGCcGCCGGgCa -3'
miRNA:   3'- uCGUCU-----CGCCCUAGGU----------CGcUGGCCgG- -5'
14340 3' -60.9 NC_003521.1 + 42544 0.66 0.785477
Target:  5'- cAGCGGuccuccgcgacgcccGGCuGGcuGUCCGGCGGCCGaGUCu -3'
miRNA:   3'- -UCGUC---------------UCGcCC--UAGGUCGCUGGC-CGG- -5'
14340 3' -60.9 NC_003521.1 + 238472 0.66 0.805811
Target:  5'- gGGCGGGGCGgagacgcggcccaGGGUCagCAGCcccaggaGGCCGGCg -3'
miRNA:   3'- -UCGUCUCGC-------------CCUAG--GUCG-------CUGGCCGg -5'
14340 3' -60.9 NC_003521.1 + 70951 0.66 0.815684
Target:  5'- gAGCGGAGCGGc-UCCGGaCGgaGCCacGCCg -3'
miRNA:   3'- -UCGUCUCGCCcuAGGUC-GC--UGGc-CGG- -5'
14340 3' -60.9 NC_003521.1 + 125318 0.66 0.799117
Target:  5'- cGCGGcGGUGGG-UCCggccacagAGCGACacgCGGCCc -3'
miRNA:   3'- uCGUC-UCGCCCuAGG--------UCGCUG---GCCGG- -5'
14340 3' -60.9 NC_003521.1 + 186534 0.66 0.782018
Target:  5'- cAGCGGGggcuccGUGGGAggCAG-GGCCGGCa -3'
miRNA:   3'- -UCGUCU------CGCCCUagGUCgCUGGCCGg -5'
14340 3' -60.9 NC_003521.1 + 115386 0.66 0.80747
Target:  5'- cGGCAuGuGCaGGGcgCgGGCGGCCgccacGGCCu -3'
miRNA:   3'- -UCGU-CuCG-CCCuaGgUCGCUGG-----CCGG- -5'
14340 3' -60.9 NC_003521.1 + 4124 0.66 0.823751
Target:  5'- -aUAGGGUGGGAUacgggAGCgGGCCGGCg -3'
miRNA:   3'- ucGUCUCGCCCUAgg---UCG-CUGGCCGg -5'
14340 3' -60.9 NC_003521.1 + 126099 0.66 0.821347
Target:  5'- cGGC-GuGCcGGAUCCAGCGgucgaucucgucguGCCGGUa -3'
miRNA:   3'- -UCGuCuCGcCCUAGGUCGC--------------UGGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.