miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14340 3' -60.9 NC_003521.1 + 154288 0.71 0.5196
Target:  5'- cGUGGAGCGGGGcggCaCGGCGuCCggGGCCg -3'
miRNA:   3'- uCGUCUCGCCCUa--G-GUCGCuGG--CCGG- -5'
14340 3' -60.9 NC_003521.1 + 226884 0.72 0.474487
Target:  5'- gGGCAGcuGCGGGGgcaccaCGGCGGCCagcgcGGCCu -3'
miRNA:   3'- -UCGUCu-CGCCCUag----GUCGCUGG-----CCGG- -5'
14340 3' -60.9 NC_003521.1 + 216874 0.72 0.483359
Target:  5'- cGUGGAGCGGGAcaUCCAgGCcauCCaGGCCa -3'
miRNA:   3'- uCGUCUCGCCCU--AGGU-CGcu-GG-CCGG- -5'
14340 3' -60.9 NC_003521.1 + 193274 0.72 0.483359
Target:  5'- uGCGGAGCGGGugCCGG-GACgGGCg -3'
miRNA:   3'- uCGUCUCGCCCuaGGUCgCUGgCCGg -5'
14340 3' -60.9 NC_003521.1 + 45649 0.72 0.492309
Target:  5'- cGGCuccGCGGGGUCCGGCGcacACCcgcuaucaggGGCCg -3'
miRNA:   3'- -UCGucuCGCCCUAGGUCGC---UGG----------CCGG- -5'
14340 3' -60.9 NC_003521.1 + 162849 0.71 0.501335
Target:  5'- uGCAGAaCGGcGAgCCcGCGGCCGGCUc -3'
miRNA:   3'- uCGUCUcGCC-CUaGGuCGCUGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 5823 0.71 0.510433
Target:  5'- gGGUGGuGCcGGGUcCCGGCGACCggGGCCc -3'
miRNA:   3'- -UCGUCuCGcCCUA-GGUCGCUGG--CCGG- -5'
14340 3' -60.9 NC_003521.1 + 215438 0.71 0.510433
Target:  5'- aAGCAGAGcCGcGGGUgCUGGCG-CCaGGCCg -3'
miRNA:   3'- -UCGUCUC-GC-CCUA-GGUCGCuGG-CCGG- -5'
14340 3' -60.9 NC_003521.1 + 122225 0.71 0.510433
Target:  5'- uGC-GAGCGcGGGUgCCGGCGACUGagcGCCg -3'
miRNA:   3'- uCGuCUCGC-CCUA-GGUCGCUGGC---CGG- -5'
14340 3' -60.9 NC_003521.1 + 138666 0.72 0.474487
Target:  5'- gAGaCGGGGCGGuGAgccucaCCGGCGACaaGGCCg -3'
miRNA:   3'- -UC-GUCUCGCC-CUa-----GGUCGCUGg-CCGG- -5'
14340 3' -60.9 NC_003521.1 + 207339 0.72 0.448377
Target:  5'- cGgGGGGCGcgucccucGGGUCgGcGCGGCCGGCCg -3'
miRNA:   3'- uCgUCUCGC--------CCUAGgU-CGCUGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 166172 0.73 0.423083
Target:  5'- cAGCAGAGgGGGGUUCAGCccguGACgcaGGCa -3'
miRNA:   3'- -UCGUCUCgCCCUAGGUCG----CUGg--CCGg -5'
14340 3' -60.9 NC_003521.1 + 137270 0.84 0.093458
Target:  5'- gGGCAGAGCGGGGgccCCAGCGACCuggaGCUg -3'
miRNA:   3'- -UCGUCUCGCCCUa--GGUCGCUGGc---CGG- -5'
14340 3' -60.9 NC_003521.1 + 74587 0.77 0.23794
Target:  5'- cGGCGGcGCGGcGUCCcGCGGCCGGCg -3'
miRNA:   3'- -UCGUCuCGCCcUAGGuCGCUGGCCGg -5'
14340 3' -60.9 NC_003521.1 + 76507 0.76 0.297307
Target:  5'- cGGcCAGAGCGGGA-CCGcGCGACaccagGGCCu -3'
miRNA:   3'- -UC-GUCUCGCCCUaGGU-CGCUGg----CCGG- -5'
14340 3' -60.9 NC_003521.1 + 129218 0.75 0.345326
Target:  5'- cGCGuGGUGGGcaGUCCGGCGccGCUGGCCa -3'
miRNA:   3'- uCGUcUCGCCC--UAGGUCGC--UGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 124202 0.74 0.367545
Target:  5'- gGGguGAGCGGGcccuuucuggCCcGCGACCgGGCCc -3'
miRNA:   3'- -UCguCUCGCCCua--------GGuCGCUGG-CCGG- -5'
14340 3' -60.9 NC_003521.1 + 71274 0.74 0.375167
Target:  5'- cGGCGGAgGCGGGggCC-GCGGCacgGGCCc -3'
miRNA:   3'- -UCGUCU-CGCCCuaGGuCGCUGg--CCGG- -5'
14340 3' -60.9 NC_003521.1 + 216737 0.74 0.382895
Target:  5'- uGGCGGAGagGGGAUgaGGCGACgGGCUc -3'
miRNA:   3'- -UCGUCUCg-CCCUAggUCGCUGgCCGG- -5'
14340 3' -60.9 NC_003521.1 + 164826 0.74 0.390728
Target:  5'- cGCGGGG-GaGGAggaaCCGGCGGCCGGCg -3'
miRNA:   3'- uCGUCUCgC-CCUa---GGUCGCUGGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.