miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14340 3' -60.9 NC_003521.1 + 155567 0.79 0.192851
Target:  5'- cGCGGAGCGGGuagCCAguuauuuGCGcGCCGGCCc -3'
miRNA:   3'- uCGUCUCGCCCua-GGU-------CGC-UGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 103467 0.7 0.565358
Target:  5'- cGCGGAuGCGGGAgggcggcUCCAGCgGGCCcGCg -3'
miRNA:   3'- uCGUCU-CGCCCU-------AGGUCG-CUGGcCGg -5'
14340 3' -60.9 NC_003521.1 + 135632 0.7 0.566305
Target:  5'- gGGCGGAucccacgaucgGCGGGGggcCCAGCG-UCGGCg -3'
miRNA:   3'- -UCGUCU-----------CGCCCUa--GGUCGCuGGCCGg -5'
14340 3' -60.9 NC_003521.1 + 103600 0.66 0.831664
Target:  5'- cGguGcGCGGGGgaUCUgaaagaagGGCGucCCGGCCg -3'
miRNA:   3'- uCguCuCGCCCU--AGG--------UCGCu-GGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 128396 0.76 0.297307
Target:  5'- gGGCcgccuGAGCGGGcgucgGUCCgaaaGGCGGCCGGUCg -3'
miRNA:   3'- -UCGu----CUCGCCC-----UAGG----UCGCUGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 174480 0.75 0.316548
Target:  5'- cGC-GAGCGGGAUCCAGUuGCugccaggCGGCCu -3'
miRNA:   3'- uCGuCUCGCCCUAGGUCGcUG-------GCCGG- -5'
14340 3' -60.9 NC_003521.1 + 120224 0.74 0.367545
Target:  5'- cGCAGAcgcuaccgGCaGGAgCCGGCGGCCGcGCCg -3'
miRNA:   3'- uCGUCU--------CGcCCUaGGUCGCUGGC-CGG- -5'
14340 3' -60.9 NC_003521.1 + 36685 0.74 0.390728
Target:  5'- gAGCuGAGgcCGGGcUCCGGCGcCUGGCCc -3'
miRNA:   3'- -UCGuCUC--GCCCuAGGUCGCuGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 182979 0.72 0.483359
Target:  5'- uAGCAGcGaCGGcGUUCGGCGucACCGGCCg -3'
miRNA:   3'- -UCGUCuC-GCCcUAGGUCGC--UGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 99306 0.71 0.52883
Target:  5'- cGCAGAGCaGGcaGGUCCGGgacgaGGCgGGCCa -3'
miRNA:   3'- uCGUCUCG-CC--CUAGGUCg----CUGgCCGG- -5'
14340 3' -60.9 NC_003521.1 + 170874 0.71 0.501335
Target:  5'- gGGCGGGcGCGGGugGUCaGGCGuCCGGCg -3'
miRNA:   3'- -UCGUCU-CGCCC--UAGgUCGCuGGCCGg -5'
14340 3' -60.9 NC_003521.1 + 123570 0.72 0.471841
Target:  5'- cGGCGGuGGCGGGAUggCGGCGGCgccgggagccgccgCGGCCg -3'
miRNA:   3'- -UCGUC-UCGCCCUAg-GUCGCUG--------------GCCGG- -5'
14340 3' -60.9 NC_003521.1 + 113842 0.77 0.248964
Target:  5'- cAGCGGcAGCGGGGcggCCGGCGACgaCGGCg -3'
miRNA:   3'- -UCGUC-UCGCCCUa--GGUCGCUG--GCCGg -5'
14340 3' -60.9 NC_003521.1 + 184168 0.71 0.510433
Target:  5'- uGCGcGAGCGGGA---GGUGcACCGGCCc -3'
miRNA:   3'- uCGU-CUCGCCCUaggUCGC-UGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 184965 0.77 0.258664
Target:  5'- cGGCGGuGCGGG--CCAGCGuggaccugugcaagGCCGGCCu -3'
miRNA:   3'- -UCGUCuCGCCCuaGGUCGC--------------UGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 44353 0.73 0.426406
Target:  5'- aGGCGGAaCGGGccgagugCCAGCGgagguucgcgcggcaGCCGGCCg -3'
miRNA:   3'- -UCGUCUcGCCCua-----GGUCGC---------------UGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 123458 0.71 0.510433
Target:  5'- uAGCGGGgaccGCGGGu--UGGCGACUGGCCc -3'
miRNA:   3'- -UCGUCU----CGCCCuagGUCGCUGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 176049 0.7 0.566305
Target:  5'- uGCAGGcGCuuGGGAUcgcCCGGUGccgcGCCGGCCg -3'
miRNA:   3'- uCGUCU-CG--CCCUA---GGUCGC----UGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 207952 0.76 0.284574
Target:  5'- cGGCGGcGCGGGcgCCAaacCGAUCGGCCu -3'
miRNA:   3'- -UCGUCuCGCCCuaGGUc--GCUGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 181452 0.74 0.360031
Target:  5'- uGCuGcGCGGcGUCCAGCGGCUGGCg -3'
miRNA:   3'- uCGuCuCGCCcUAGGUCGCUGGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.