miRNA display CGI


Results 41 - 60 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14340 5' -57.9 NC_003521.1 + 111401 0.72 0.578899
Target:  5'- --cGCGCUGCAGC-GG-CUCC-CCCAu -3'
miRNA:   3'- cauUGCGACGUCGaCCuGAGGcGGGU- -5'
14340 5' -57.9 NC_003521.1 + 112360 0.67 0.841719
Target:  5'- cGUAcgcACGCgGCGGCUGcGGCgUCuCGUCCAc -3'
miRNA:   3'- -CAU---UGCGaCGUCGAC-CUG-AG-GCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 113526 0.67 0.871758
Target:  5'- --uGCGCaGCGGCUGGGauccCUCgCGCCgGg -3'
miRNA:   3'- cauUGCGaCGUCGACCU----GAG-GCGGgU- -5'
14340 5' -57.9 NC_003521.1 + 113713 0.73 0.520691
Target:  5'- -aGACGCUGCuGgUGGACcucuucuaCCGCCCGa -3'
miRNA:   3'- caUUGCGACGuCgACCUGa-------GGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 114309 0.69 0.755078
Target:  5'- aUAACGCcGCGGacCUGGGCUucugCCGCCUg -3'
miRNA:   3'- cAUUGCGaCGUC--GACCUGA----GGCGGGu -5'
14340 5' -57.9 NC_003521.1 + 116760 0.67 0.857123
Target:  5'- -cGugGCuugUGCAGCgUGGGCcgCCGCCgCGg -3'
miRNA:   3'- caUugCG---ACGUCG-ACCUGa-GGCGG-GU- -5'
14340 5' -57.9 NC_003521.1 + 117257 0.66 0.904728
Target:  5'- -cGGCGCUGCAcgacugccuggcGCUGcAC-CUGCCCGa -3'
miRNA:   3'- caUUGCGACGU------------CGACcUGaGGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 118265 0.68 0.791419
Target:  5'- cGUGACGCUagccaugaucuGCGGCgaccucuagGGACgCCGCCgCAa -3'
miRNA:   3'- -CAUUGCGA-----------CGUCGa--------CCUGaGGCGG-GU- -5'
14340 5' -57.9 NC_003521.1 + 119179 0.69 0.773487
Target:  5'- -cGGCGC-GCAGCUGGAUcuggggCCGCUUg -3'
miRNA:   3'- caUUGCGaCGUCGACCUGa-----GGCGGGu -5'
14340 5' -57.9 NC_003521.1 + 122858 0.78 0.278833
Target:  5'- cGUAGCGCUGguGCUGGcCgCCGCCgCGa -3'
miRNA:   3'- -CAUUGCGACguCGACCuGaGGCGG-GU- -5'
14340 5' -57.9 NC_003521.1 + 125102 0.68 0.79142
Target:  5'- -aGGCGCUGCGGgaUGGGCaccacggCCGCCg- -3'
miRNA:   3'- caUUGCGACGUCg-ACCUGa------GGCGGgu -5'
14340 5' -57.9 NC_003521.1 + 125407 0.73 0.50178
Target:  5'- uGUGcUGCUGCAGCgGGAUgaUCuCGCCCAc -3'
miRNA:   3'- -CAUuGCGACGUCGaCCUG--AG-GCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 126786 0.68 0.817283
Target:  5'- cUGGCGCUGC-GCgUGGuccaGCUCCGCgCGc -3'
miRNA:   3'- cAUUGCGACGuCG-ACC----UGAGGCGgGU- -5'
14340 5' -57.9 NC_003521.1 + 133646 0.74 0.455913
Target:  5'- -aAGCuGCUGCuGCUGGAC-CUGCCCc -3'
miRNA:   3'- caUUG-CGACGuCGACCUGaGGCGGGu -5'
14340 5' -57.9 NC_003521.1 + 137318 0.72 0.578898
Target:  5'- --cGCGcCUGCuGCUGGGCUC-GCCCu -3'
miRNA:   3'- cauUGC-GACGuCGACCUGAGgCGGGu -5'
14340 5' -57.9 NC_003521.1 + 137841 0.71 0.648312
Target:  5'- --cACGCcGCGGCUGGGCcgccCCGCCa- -3'
miRNA:   3'- cauUGCGaCGUCGACCUGa---GGCGGgu -5'
14340 5' -57.9 NC_003521.1 + 138720 0.67 0.840929
Target:  5'- --uGCGCUGCacggagaAGCUGGGCcugcgcaucaUCaCGCCCu -3'
miRNA:   3'- cauUGCGACG-------UCGACCUG----------AG-GCGGGu -5'
14340 5' -57.9 NC_003521.1 + 141292 0.67 0.871758
Target:  5'- ---cCGCUGCGGCacGGuCUCCGaCCUg -3'
miRNA:   3'- cauuGCGACGUCGa-CCuGAGGC-GGGu -5'
14340 5' -57.9 NC_003521.1 + 141985 0.66 0.898564
Target:  5'- ----aGCUGCAGCgGGAgCUggcCCGCgCCAa -3'
miRNA:   3'- cauugCGACGUCGaCCU-GA---GGCG-GGU- -5'
14340 5' -57.9 NC_003521.1 + 142687 0.7 0.687865
Target:  5'- -cGGCgGCaGCAGCUaccacGGACUCCGCgCCGc -3'
miRNA:   3'- caUUG-CGaCGUCGA-----CCUGAGGCG-GGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.